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(-) Description

Title :  STRUCTURE OF CRYPTOCHROME 3 - DNA COMPLEX
 
Authors :  R. Pokorny, T. Klar, U. Hennecke, T. Carell, A. Batschauer, L. -O. Esse
Date :  13 May 08  (Deposition) - 02 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,G,H  (1x)
Biol. Unit 2:  C,D,I,J  (1x)
Biol. Unit 3:  E,F,K,L  (1x)
Keywords :  Lyase-Dna Complex, Lyase Dna Complex, Flavin Adenine Dinucleotide, Dna, Dna-Binding, Cryptochrome, Flavoprotein, Mitochondrion, Fad, Photolyase, Chromophore, Chloroplast, Transit Peptide, Single-Stranded Dna, Cyclobutane-Pyrimidine Dimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Pokorny, T. Klar, U. Hennecke, T. Carell, A. Batschauer, L. -O. Esse
Recognition And Repair Of Uv Lesions In Loop Structures Of Duplex Dna By Dash-Type Cryptochrome.
Proc. Natl. Acad. Sci. Usa V. 105 21023 2008
PubMed-ID: 19074258  |  Reference-DOI: 10.1073/PNAS.0805830106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CRYPTOCHROME DASH
    Chains: A, C, D, E, F
    EC Number: 4.1.99.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-60
    Expression System Strain: M15-PREP4
    Expression System Taxid: 562
    Fragment: CRYPTOCHROME DASH, RESIDUES 44-569
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: MATURE PROTEIN WITHOUT PLASTID IMPORT SEQUENCE
    Synonym: CRYPTOCHROME 3
 
Molecule 2 - CRYPTOCHROME DASH
    Chains: B
    EC Number: 4.1.99.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-60
    Expression System Strain: M15-PREP4
    Expression System Taxid: 562
    Fragment: CRYPTOCHROME DASH, RESIDUES 44-482,484-489,490-569
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: MATURE PROTEIN WITHOUT PLASTID IMPORT SEQUENCE
    Synonym: CRYPTOCHROME 3
 
Molecule 3 - 5'-D(*DT*DT*DT*DT*DTP)-3'
    Chains: G, H, I, J, K, L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: FORMACETAL LINKAGE REPLACES PHOSPHATE
    Synonym: T5-OLIGONUCLEOTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB    GH    
Biological Unit 2 (1x):   CD    IJ  
Biological Unit 3 (1x):     EF    KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric Unit (5, 27)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL8Ligand/IonCHLORIDE ION
3FAD6Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4MHF6Ligand/Ion5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
5TCP6Mod. Nucleotide5'-METHYLTHYMIDINE
Biological Unit 1 (4, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4MHF2Ligand/Ion5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
5TCP2Mod. Nucleotide5'-METHYLTHYMIDINE
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4MHF2Ligand/Ion5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
5TCP2Mod. Nucleotide5'-METHYLTHYMIDINE
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4MHF2Ligand/Ion5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
5TCP2Mod. Nucleotide5'-METHYLTHYMIDINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:272 , SER A:285 , THR A:286 , LYS A:287 , PHE A:288 , SER A:289 , LEU A:292 , GLU A:325 , ARG A:329 , PHE A:388 , ASN A:391 , ARG A:394 , GLN A:395 , LEU A:420 , ASP A:422 , TYR A:423 , ASP A:424 , SER A:427 , ASN A:428 , ASN A:431 , TRP A:432 , HOH A:2173 , HOH A:2174 , HOH A:2240 , HOH A:2269 , HOH A:2270 , DT G:2 , TCP G:3BINDING SITE FOR RESIDUE FAD A 998
02AC2SOFTWAREHIS A:83 , LYS A:89 , CYS A:146 , SER A:147 , GLU A:148 , GLU A:149 , ASN A:341 , PHE A:344 , HIS A:345 , GLU A:417 , TYR A:423 , PRO A:425 , TYR A:429 , HOH A:2271 , HOH A:2272 , PHE B:188 , ASP B:189 , ASP B:192 , LYS B:338BINDING SITE FOR RESIDUE MHF A 999
03AC3SOFTWAREARG A:51 , ASP A:54 , ASP A:56 , HIS A:142 , ARG A:300 , HOH A:2190BINDING SITE FOR RESIDUE CL A1501
04AC4SOFTWARETYR B:272 , SER B:285 , THR B:286 , LYS B:287 , PHE B:288 , SER B:289 , LEU B:292 , GLU B:325 , ARG B:329 , PHE B:332 , PHE B:388 , ASN B:391 , ARG B:394 , LEU B:420 , ASP B:422 , TYR B:423 , ASP B:424 , ASN B:428 , ASN B:431 , TRP B:432 , HOH B:2123 , HOH B:2124 , HOH B:2158 , HOH B:2168 , HOH B:2176 , DT H:2 , TCP H:3BINDING SITE FOR RESIDUE FAD B 998
05AC5SOFTWAREPHE A:188 , ASP A:189 , LYS A:338 , HOH A:2129 , HIS B:83 , LYS B:89 , CYS B:146 , SER B:147 , GLU B:148 , GLU B:149 , ASN B:341 , PHE B:344 , HIS B:345 , GLU B:417 , TYR B:423 , PRO B:425 , TYR B:429 , HOH B:2178BINDING SITE FOR RESIDUE MHF B 999
06AC6SOFTWAREARG B:51 , ASP B:54 , ASP B:56 , HIS B:142 , ARG B:300BINDING SITE FOR RESIDUE CL B1498
07AC7SOFTWAREGLY B:281 , HOH B:2108 , HOH B:2175BINDING SITE FOR RESIDUE CL B1499
08AC8SOFTWAREARG B:119 , ASP B:224 , ASP B:225BINDING SITE FOR RESIDUE ACT B1500
09AC9SOFTWARETYR C:272 , SER C:285 , THR C:286 , LYS C:287 , PHE C:288 , SER C:289 , LEU C:292 , GLU C:325 , ARG C:329 , PHE C:332 , PHE C:388 , ASN C:391 , ARG C:394 , GLN C:395 , LEU C:420 , ASP C:422 , TYR C:423 , ASP C:424 , ASN C:428 , ASN C:431 , TRP C:432 , HOH C:2159 , HOH C:2161 , HOH C:2209 , HOH C:2223 , HOH C:2252 , DT I:2 , TCP I:3BINDING SITE FOR RESIDUE FAD C 998
10BC1SOFTWARELYS C:89 , CYS C:146 , SER C:147 , GLU C:148 , GLU C:149 , ASN C:341 , PHE C:344 , HIS C:345 , GLU C:417 , TYR C:423 , PRO C:425 , TYR C:429 , HOH C:2253 , HOH C:2255 , HOH C:2256 , HOH C:2257 , PHE D:188 , ASP D:189 , LYS D:338BINDING SITE FOR RESIDUE MHF C 999
11BC2SOFTWAREARG C:51 , ASP C:54 , ASP C:56 , HIS C:142 , ARG C:300BINDING SITE FOR RESIDUE CL C1499
12BC3SOFTWAREGLY C:281 , HOH C:2142 , HOH C:2243BINDING SITE FOR RESIDUE CL C1500
13BC4SOFTWARETYR D:272 , SER D:285 , THR D:286 , LYS D:287 , PHE D:288 , SER D:289 , LEU D:292 , GLU D:325 , ARG D:329 , PHE D:332 , PHE D:388 , ASN D:391 , ARG D:394 , GLN D:395 , LEU D:420 , ASP D:422 , TYR D:423 , ASP D:424 , SER D:427 , ASN D:428 , ASN D:431 , TRP D:432 , HOH D:2143 , HOH D:2144 , HOH D:2190 , HOH D:2200 , HOH D:2205 , DT J:2 , TCP J:3BINDING SITE FOR RESIDUE FAD D 998
14BC5SOFTWAREPHE C:188 , ASP C:189 , ASP C:192 , LYS C:338 , LYS D:89 , CYS D:146 , SER D:147 , GLU D:148 , GLU D:149 , ASN D:341 , PHE D:344 , HIS D:345 , GLU D:417 , TYR D:423 , PRO D:425 , TYR D:429 , HOH D:2206 , HOH D:2208 , HOH D:2209BINDING SITE FOR RESIDUE MHF D 999
15BC6SOFTWAREARG D:51 , ASP D:54 , ASP D:56 , HIS D:142 , ARG D:300 , HOH D:2160BINDING SITE FOR RESIDUE CL D1498
16BC7SOFTWARETYR E:272 , SER E:285 , THR E:286 , LYS E:287 , PHE E:288 , SER E:289 , LEU E:292 , GLU E:325 , ARG E:329 , PHE E:332 , PHE E:388 , ASN E:391 , ARG E:394 , GLN E:395 , LEU E:420 , ASP E:422 , TYR E:423 , ASP E:424 , SER E:427 , ASN E:428 , ASN E:431 , TRP E:432 , HOH E:2146 , HOH E:2147 , HOH E:2197 , HOH E:2211 , HOH E:2230 , DT K:2 , TCP K:3BINDING SITE FOR RESIDUE FAD E 998
17BC8SOFTWARELYS E:89 , CYS E:146 , SER E:147 , GLU E:148 , GLU E:149 , ASN E:341 , PHE E:344 , HIS E:345 , GLU E:417 , TYR E:423 , PRO E:425 , TYR E:429 , HOH E:2231 , HOH E:2233 , PHE F:188 , ASP F:189 , LYS F:338BINDING SITE FOR RESIDUE MHF E 999
18BC9SOFTWAREARG E:51 , ASP E:54 , ASP E:56 , HIS E:142 , ARG E:300BINDING SITE FOR RESIDUE CL E1499
19CC1SOFTWARETYR F:272 , SER F:285 , THR F:286 , LYS F:287 , PHE F:288 , SER F:289 , LEU F:292 , GLU F:325 , ARG F:329 , PHE F:388 , ASN F:391 , ARG F:394 , GLN F:395 , LEU F:420 , ASP F:422 , TYR F:423 , ASP F:424 , SER F:427 , ASN F:428 , ASN F:431 , TRP F:432 , HOH F:2077 , HOH F:2078 , HOH F:2106 , HOH F:2116 , DT L:2 , TCP L:3BINDING SITE FOR RESIDUE FAD F 998
20CC2SOFTWAREPHE E:188 , ASP E:189 , ASP E:192 , LYS E:338 , HOH E:2107 , HIS F:83 , LYS F:89 , CYS F:146 , SER F:147 , GLU F:148 , GLU F:149 , ASN F:341 , PHE F:344 , HIS F:345 , GLU F:417 , TYR F:423 , PRO F:425 , TYR F:429 , HOH F:2119BINDING SITE FOR RESIDUE MHF F 999
21CC3SOFTWAREHIS F:5 , GLY F:281 , HOH F:2068BINDING SITE FOR RESIDUE CL F1498

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VTB)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Val A:7 -Pro A:8
2Gly A:218 -Pro A:219
3Val B:7 -Pro B:8
4Gly B:218 -Pro B:219
5Val C:7 -Pro C:8
6Gly C:218 -Pro C:219
7Val D:7 -Pro D:8
8Gly D:218 -Pro D:219
9Val E:7 -Pro E:8
10Gly E:218 -Pro E:219
11Val F:7 -Pro F:8
12Gly F:218 -Pro F:219

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VTB)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHR_CRY_ALPHA_BETAPS51645 Photolyase/cryptochrome alpha/beta domain profile.CRYD_ARATH84-221
 
 
 
 
 		  6A:40-177
B:40-177
C:40-177
D:40-177
E:40-177
F:40-177
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHR_CRY_ALPHA_BETAPS51645 Photolyase/cryptochrome alpha/beta domain profile.CRYD_ARATH84-221
 
 
 
 
 		  2A:40-177
B:40-177
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHR_CRY_ALPHA_BETAPS51645 Photolyase/cryptochrome alpha/beta domain profile.CRYD_ARATH84-221
 
 
 
 
 		  2-
-
C:40-177
D:40-177
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHR_CRY_ALPHA_BETAPS51645 Photolyase/cryptochrome alpha/beta domain profile.CRYD_ARATH84-221
 
 
 
 
 		  2-
-
-
-
E:40-177
F:40-177

(-) Exons   (0, 0)

(no "Exon" information available for 2VTB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:500
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:500
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543
           CRYD_ARATH    44 MNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHGNG 543
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhhhhhhhhhhhhhh.............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh........................................eee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------PHR_CRY_ALPHA_BETA  PDB: A:40-177 UniProt: 84-221                                                                                         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb A   0 MNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHGNG 499
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499


Chain B from PDB  Type:PROTEIN  Length:491
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:495
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535     
           CRYD_ARATH    46 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKH 540
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhhhhhhhhhhhh.............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhheeeeeee...hhhhhhhhhhhhhhhhhhh...eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh.......................................eeee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh..-...---...hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------PHR_CRY_ALPHA_BETA  PDB: B:40-177 UniProt: 84-221                                                                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb B   2 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVNGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV-NDP---RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKH 496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      |440|   |  451       461       471       481       491     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              438 | | 446                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                439 |                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  441                                                      


Chain C from PDB  Type:PROTEIN  Length:495
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:495
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536     
           CRYD_ARATH    47 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHG 541
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhhee............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh.......ee..............................eeee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------PHR_CRY_ALPHA_BETA  PDB: C:40-177 UniProt: 84-221                                                                                         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb C   3 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHG 497
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     


Chain D from PDB  Type:PROTEIN  Length:484
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:495
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535     
           CRYD_ARATH    46 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKH 540
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhhhhhhhhhhhh.............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh.......................................eeee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhhhhhh-----------........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------PHR_CRY_ALPHA_BETA  PDB: D:40-177 UniProt: 84-221                                                                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb D   2 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRL-----------MYMDTVVPLKH 496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471  |      -    |  491     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  474         486          


Chain E from PDB  Type:PROTEIN  Length:496
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:496
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535      
           CRYD_ARATH    46 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHG 541
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...hhhhhhhhhhhhhhhh..............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh..........................hhhhh.........eee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------PHR_CRY_ALPHA_BETA  PDB: E:40-177 UniProt: 84-221                                                                                         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb E   2 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHG 497
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      


Chain F from PDB  Type:PROTEIN  Length:480
 aligned with CRYD_ARATH | Q84KJ5 from UniProtKB/Swiss-Prot  Length:569

    Alignment length:494
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536    
           CRYD_ARATH    47 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKH 540
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------DNA_photolyase-2vtbF01 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF07 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------DNA_photolyase-2vtbF02 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF08 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (2)
           Pfam domains (3) ---------------------------------------DNA_photolyase-2vtbF03 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF09 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (3)
           Pfam domains (4) ---------------------------------------DNA_photolyase-2vtbF04 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF10 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (4)
           Pfam domains (5) ---------------------------------------DNA_photolyase-2vtbF05 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF11 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (5)
           Pfam domains (6) ---------------------------------------DNA_photolyase-2vtbF06 F:42-219                                                                                                                                                   ------------------------------FAD_binding_7-2vtbF12 F:250-492                                                                                                                                                                                                                    ---- Pfam domains (6)
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhhh.............eeeeee........hhhhhhhhhh..eeeeeeeehhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eeeee......hhhhh..hhhhh..hhhhhhhhhhhhh.......................................eeee..hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh......---...hhhhhhhhhh..hhhhhhhhhhhh..-----------........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------PHR_CRY_ALPHA_BETA  PDB: F:40-177 UniProt: 84-221                                                                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vtb F   3 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP---RYFSIPKQAQNYDPEGEYVAFWLQQLRRL-----------MYMDTVVPLKH 496
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442   |   452       462       472 |       -   |   492    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 442 446                         474         486          


Chain G from PDB  Type:DNA  Length:5
                                     
                 2vtb G   1 TTtTT   5
                              |  
                              3-TCP


Chain H from PDB  Type:DNA  Length:5
                                     
                 2vtb H   1 TTtTT   5
                              |  
                              |  
                              3-TCP


Chain I from PDB  Type:DNA  Length:5
                                     
                 2vtb I   1 TTtTT   5
                              |  
                              |  
                              3-TCP


Chain J from PDB  Type:DNA  Length:5
                                     
                 2vtb J   1 TTtTT   5
                              |  
                              |  
                              3-TCP


Chain K from PDB  Type:DNA  Length:4
                                    
                 2vtb K   2 TtTT   5
                             |  
                             |  
                             3-TCP


Chain L from PDB  Type:DNA  Length:4
                                    
                 2vtb L   2 TtTT   5
                             |  
                             |  
                             3-TCP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VTB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VTB)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: HUP (230)
(-)
Clan: no clan defined [family: FAD_binding_7] (11)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CRYD_ARATH | Q84KJ5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003913    DNA photolyase activity    Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0009881    photoreceptor activity    The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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  2vtb
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRYD_ARATH | Q84KJ5: 2ijg 2j4d

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2VTB)