2VSW - JenaLib

Title :   THE STRUCTURE OF THE RHODANESE DOMAIN OF THE HUMAN DUAL SPECIFICITY PHOSPHATASE 16

Authors :   J. W. Murray, A. Barr, A. C. W. Pike, J. Elkins, C. Phillips, J. Wang, P. Sa A. Roos, S. Bishop, M. Wickstroem, C. Bountra, A. M. Edwards, C. H. Arro N. Burgess-Brown, N. Pantic, J. Bray, F. Von Delft, O. Gileadi, S. Kna

Date :   30 Apr 08 (Deposition) - 15 Jul 08 (Release) - 05 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: B  (2x)

Keywords :   Hydrolase, Nucleus, Casp8 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Murray, A. Barr, A. C. W. Pike, J. Elkins, C. Phillips, J. Wang, E. Salah, F. Niesen, P. Savitsky, A. Roos, S. Bishop, M. Wickstroem, C. Bountra, A. M. Edwards, C. H. Arrowsmith, N. Burgess-Brown, N. Pantic, J. Bray, F. Von Delft, O. Gileadi, S. Knapp
The Structure Of The Rhodanese Domain Of The Human Dual Specifity Phosphatase 16
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051753	T	23	M	DUS16_HUMAN	Polymorphism	36049447	A/B	T	23	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051753	T	23	M	DUS16_HUMAN	Polymorphism	36049447	A/B	T	23	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051753	T	23	M	DUS16_HUMAN	Polymorphism	36049447	A	T	23	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051753	T	23	M	DUS16_HUMAN	Polymorphism	36049447	B	T	23	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:134
 aligned with DUS16_HUMAN | Q9BY84 from UniProtKB/Swiss-Prot  Length:665

    Alignment length:134
                                    14        24        34        44        54        64        74        84        94       104       114       124       134    
          DUS16_HUMAN     5 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG 138
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeehhhhhhhhhh.....eeeee..hhhhhhhhee...ee...hhhhhhhhhh...hhhhhhhhh...........eeeee.....hhhhh...hhhhhhhhhhhhhh..eeee.hhhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ------------------M------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------RHODANESE_3  PDB: A:22-137 UniProt: 22-137                                                                          - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vsw A   5 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG 138
                                    14        24        34        44        54        64        74        84        94       104       114       124       134

Chain B from PDB  Type:PROTEIN  Length:134
 aligned with DUS16_HUMAN | Q9BY84 from UniProtKB/Swiss-Prot  Length:665

    Alignment length:134
                                    14        24        34        44        54        64        74        84        94       104       114       124       134    
          DUS16_HUMAN     5 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG 138
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Rhodanese-2vswB01 B:11-131                                                                                               ------- Pfam domains (1)
           Pfam domains (2) ------Rhodanese-2vswB02 B:11-131                                                                                               ------- Pfam domains (2)
         Sec.struct. author ...eeeehhhhhhhhhh....eeeee..hhhhhhhhee...ee...hhhhhhhhhh...hhhhhhhhh...........eeeee.............hhhhhhhhhhhhhh.eeeeeehhhhhhhh.hhh.ee. Sec.struct. author
                 SAPs(SNPs) ------------------M------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------RHODANESE_3  PDB: B:22-137 UniProt: 22-137                                                                          - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vsw B   5 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG 138
                                    14        24        34        44        54        64        74        84        94       104       114       124       134

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (18, 18)

Asymmetric Unit(hide GO term definitions)

Chain A,B (DUS16_HUMAN | Q9BY84)

molecular function
	GO:0017017	MAP kinase tyrosine/serine/threonine phosphatase activity	Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0045204	MAPK export from nucleus	The directed movement of a MAP kinase from the nucleus to the cytoplasm.
	GO:0045209	MAPK phosphatase export from nucleus, leptomycin B sensitive	Leptomycin B-sensitive movement of a MAPK phosphatase from the nucleus to the cytoplasm.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0000188	inactivation of MAPK activity	Any process that terminates the activity of the active enzyme MAP kinase.
	GO:0043409	negative regulation of MAPK cascade	Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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