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(-) Description

Title :  POLYSULFIDE REDUCTASE NATIVE STRUCTURE
 
Authors :  M. Jormakka, K. Yokoyama, T. Yano, M. Tamakoshi, S. Akimoto, T. Shimamura, P. Curmi, S. Iwata
Date :  09 Mar 08  (Deposition) - 10 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,E,F,G
Keywords :  Oxidoreductase, Molybdopterin Guanine Dinucleotide, Iron-Sulfur, Metal-Binding, Molybdopterin, Integral Membrane Protein, Mgd, Mpt, Iron, Fe4S4, 4Fe-4S, Molybdenum, Iron Sulfur Cluster (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jormakka, K. Yokoyama, T. Yano, M. Tamakoshi, S. Akimoto, T. Shimamura, P. Curmi, S. Iwata
Molecular Mechanism Of Energy Conservation In Polysulfide Respiration
Nat. Struct. Mol. Biol. V. 15 730 2008
PubMed-ID: 18536726  |  Reference-DOI: 10.1038/NSMB.1434

(-) Compounds

Molecule 1 - THIOSULFATE REDUCTASE
    Chains: A, E
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27
    Synonym: POLYSULFIDE REDUCTASE
 
Molecule 2 - NRFC PROTEIN
    Chains: B, F
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27
 
Molecule 3 - HYPOTHETICAL MEMBRANE SPANNING PROTEIN
    Chains: C, G
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1MGD4Ligand/Ion2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
2MO2Ligand/IonMOLYBDENUM ATOM
3SF410Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:44 , CYS A:47 , CYS A:51 , CYS A:79 , ARG A:81 , GLY A:82 , ASN A:216BINDING SITE FOR RESIDUE SF4 A1764
02AC2SOFTWAREPHE A:48 , HIS A:145 , LEU A:172 , CYS A:173 , HIS A:333 , TYR A:438 , GLY A:439 , ILE A:440 , ASN A:441 , HIS A:444 , SER A:445 , ILE A:465 , ASP A:466 , GLN A:470 , HIS A:472 , GLU A:482 , ARG A:488 , TYR A:623 , ARG A:625 , PHE A:631 , ALA A:632 , ARG A:633 , HIS A:697 , ASP A:716 , ASN A:717 , GLN A:720 , MGD A:1766 , MO A:1767 , HOH A:2010 , HOH A:2384 , HOH A:2385BINDING SITE FOR RESIDUE MGD A1765
03AC3SOFTWAREARG A:81 , CYS A:173 , GLY A:207 , HIS A:208 , HIS A:209 , GLU A:212 , ASP A:213 , THR A:214 , HIS A:215 , VAL A:235 , ASP A:236 , PRO A:237 , ARG A:238 , GLY A:255 , ASP A:257 , THR A:331 , ARG A:332 , HIS A:333 , TRP A:336 , TYR A:337 , ARG A:625 , SER A:626 , HIS A:629 , THR A:630 , PHE A:631 , ARG A:735 , MGD A:1765 , MO A:1767 , HOH A:2116BINDING SITE FOR RESIDUE MGD A1766
04AC4SOFTWARECYS A:173 , MGD A:1765 , MGD A:1766BINDING SITE FOR RESIDUE MO A1767
05AC5SOFTWARECYS B:13 , VAL B:14 , CYS B:16 , ALA B:18 , CYS B:19 , ILE B:38 , CYS B:135 , CYS B:139BINDING SITE FOR RESIDUE SF4 B1194
06AC6SOFTWARECYS B:23 , ASN B:27 , LEU B:36 , GLN B:57 , CYS B:116 , THR B:117 , CYS B:119 , PRO B:129 , ALA B:130 , CYS B:131BINDING SITE FOR RESIDUE SF4 B1195
07AC7SOFTWARECYS B:58 , LEU B:59 , HIS B:60 , CYS B:61 , PRO B:64 , CYS B:66 , VAL B:83 , CYS B:100 , LYS B:115BINDING SITE FOR RESIDUE SF4 B1196
08AC8SOFTWARECYS B:70 , CYS B:90 , ILE B:91 , ALA B:92 , CYS B:93 , GLY B:94 , CYS B:96BINDING SITE FOR RESIDUE SF4 B1197
09AC9SOFTWARECYS E:44 , CYS E:47 , TRP E:49 , CYS E:51 , CYS E:79 , ARG E:81 , GLY E:82 , ASN E:216BINDING SITE FOR RESIDUE SF4 E1764
10BC1SOFTWAREPHE E:48 , HIS E:145 , PRO E:168 , LEU E:172 , CYS E:173 , HIS E:333 , TYR E:438 , GLY E:439 , ILE E:440 , ASN E:441 , HIS E:444 , SER E:445 , ILE E:465 , ASP E:466 , HIS E:472 , GLU E:482 , ARG E:488 , TYR E:623 , ARG E:625 , PHE E:631 , ALA E:632 , ARG E:633 , HIS E:697 , ASP E:716 , ASN E:717 , GLN E:720 , MGD E:1766 , MO E:1767 , HOH E:2011 , HOH E:2398 , HOH E:2415 , HOH E:2449BINDING SITE FOR RESIDUE MGD E1765
11BC2SOFTWAREARG E:81 , CYS E:173 , HIS E:208 , HIS E:209 , GLU E:212 , ASP E:213 , THR E:214 , HIS E:215 , VAL E:235 , ASP E:236 , PRO E:237 , ARG E:238 , PRO E:254 , GLY E:255 , ASP E:257 , THR E:331 , ARG E:332 , HIS E:333 , TRP E:336 , TYR E:337 , LEU E:622 , ARG E:625 , SER E:626 , PRO E:627 , HIS E:629 , THR E:630 , PHE E:631 , ARG E:735 , MGD E:1765 , MO E:1767 , HOH E:2133 , HOH E:2451BINDING SITE FOR RESIDUE MGD E1766
12BC3SOFTWARECYS E:173 , MGD E:1765 , MGD E:1766 , HOH E:2217BINDING SITE FOR RESIDUE MO E1767
13BC4SOFTWARECYS F:13 , VAL F:14 , GLY F:15 , CYS F:16 , CYS F:19 , ILE F:38 , PRO F:55 , CYS F:135 , CYS F:139BINDING SITE FOR RESIDUE SF4 F1194
14BC5SOFTWARECYS F:23 , ASN F:27 , LEU F:36 , CYS F:116 , CYS F:119 , PRO F:129 , ALA F:130 , CYS F:131BINDING SITE FOR RESIDUE SF4 F1195
15BC6SOFTWARECYS F:58 , LEU F:59 , CYS F:61 , PRO F:65 , CYS F:66 , VAL F:83 , CYS F:100 , TYR F:102 , ARG F:105BINDING SITE FOR RESIDUE SF4 F1196
16BC7SOFTWARECYS F:70 , CYS F:90 , ILE F:91 , ALA F:92 , CYS F:93 , GLY F:94 , CYS F:96 , VAL F:113BINDING SITE FOR RESIDUE SF4 F1197

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VPZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:323 -Pro A:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VPZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VPZ)

(-) Exons   (0, 0)

(no "Exon" information available for 2VPZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:735
 aligned with Q72LA4_THET2 | Q72LA4 from UniProtKB/TrEMBL  Length:765

    Alignment length:735
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759     
         Q72LA4_THET2    30 APWYAQEVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGHGTGDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLGLDLETMKGMGTLVQRGKPWLEDWEKEGRLPFGTASGKIELYCQRFKEAGHQPLPVFTPPEEPPEGFYRLLYGRSPVHTFARTQNNWVLMEMDPENEVWIHKEEAKRLGLKEGDYVMLVNQDGVKEGPVRVKPTARIRKDCVYIVHGFGHKAPLMRLAHGRGASDNYLQTRYKLDPISGGAGLRVNFVRLEKAERPRLPSLTGLAKRPFDERR 764
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzA01 A:30-96 ADC-like domains                                   2vpzA02 A:97-171,A:413-484,A:509-532  [code=3.40.50.740, no name defined]  2vpzA03 A:172-377,A:570-604 Dimethylsulfoxide Reductase, domain 2                                                                                                                                             -----------------------------------2vpzA02 A:97-171,A:413-484,A:509-532                                    2vpzA04                 2vpzA02                 2vpzA04 A:485-508,A:533-569          2vpzA03 A:172-377,A:570-604        2vpzA05 A:605-764  [code=2.40.40.20, no name defined]                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeeee........eeeeee....eeeeee...........hhhhhhhhhhhhh.......eee..........eee.hhhhhhhhhhhhhhhhhhhhhhhhheeee...hhhhhh.hhhhhhh...eehhhhhh.hhhhhhhhhhhh..........hhhhh.eeeee........hhhhhhhhhhhhhh..eeeee......hhhhh.eee.....hhhhhhhhhhhhhhhh...hhhhhhhhee.hhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhh....ee............hhhhhhhhhhhhhhhh..................................................................hhhhhh.......eeee..hhhhhh.hhhhhhhhhhh...eeeee............eee...........eee.....eee.............hhhhhhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhh.eee......hhhhhh..........ee...hhhhhhhhh.................eeeeee............hhhhhh.....eee.hhhhhhhh......eeeeee....eeeeeeee........eeeee...........................ee......ee....eeeeeee......hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz A  30 APWYAQEVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGHGTGDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLGLDLETMKGMGTLVQRGKPWLEDWEKEGRLPFGTASGKIELYCQRFKEAGHQPLPVFTPPEEPPEGFYRLLYGRSPVHTFARTQNNWVLMEMDPENEVWIHKEEAKRLGLKEGDYVMLVNQDGVKEGPVRVKPTARIRKDCVYIVHGFGHKAPLMRLAHGRGASDNYLQTRYKLDPISGGAGLRVNFVRLEKAERPRLPSLTGLAKRPFDERR 764
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759     


Chain B from PDB  Type:PROTEIN  Length:194
 aligned with Q72LA5_THET2 | Q72LA5 from UniProtKB/TrEMBL  Length:195

    Alignment length:194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    
         Q72LA5_THET2     1 MPRYAMAIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLRPEQGTRPKLFYLNAPSKKGLTRESEVHH 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzB01 B:1-63,B:116-187  [code=3.30.70.20, no name defined]   2vpzB02 B:64-115  [code=3.30.70.20, no name defined]2vpzB01 B:1-63,B:116-187  [code=3.30.70.20, no name defined]            ------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.......hhhhhhhhhhh........eeeeeeee......eeeeeeee.................eee.....eee........hhhhhhh.....ee.....ee....hhhhhhh...hhhhhh.....eeeee.....hhhhhhhhhh..ee...........eeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz B   1 MPRYAMAIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLRPEQGTRPKLFYLNAPSKKGLTRESEVHH 194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    


Chain C from PDB  Type:PROTEIN  Length:251
 aligned with Q72LA6_THET2 | Q72LA6 from UniProtKB/TrEMBL  Length:253

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
         Q72LA6_THET2     2 AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQGLG 252
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzC00 C:2-252 Formate dehydrogenase/DMSO reductase domain                                                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh........hhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz C   2 AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQGLG 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 


Chain E from PDB  Type:PROTEIN  Length:735
 aligned with Q72LA4_THET2 | Q72LA4 from UniProtKB/TrEMBL  Length:765

    Alignment length:735
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759     
         Q72LA4_THET2    30 APWYAQEVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGHGTGDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLGLDLETMKGMGTLVQRGKPWLEDWEKEGRLPFGTASGKIELYCQRFKEAGHQPLPVFTPPEEPPEGFYRLLYGRSPVHTFARTQNNWVLMEMDPENEVWIHKEEAKRLGLKEGDYVMLVNQDGVKEGPVRVKPTARIRKDCVYIVHGFGHKAPLMRLAHGRGASDNYLQTRYKLDPISGGAGLRVNFVRLEKAERPRLPSLTGLAKRPFDERR 764
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzE01 E:30-96 ADC-like domains                                   2vpzE02 E:97-171,E:413-484,E:509-532  [code=3.40.50.740, no name defined]  2vpzE03 E:172-377,E:570-604 Dimethylsulfoxide Reductase, domain 2                                                                                                                                             -----------------------------------2vpzE02 E:97-171,E:413-484,E:509-532                                    2vpzE04                 2vpzE02                 2vpzE04 E:485-508,E:533-569          2vpzE03 E:172-377,E:570-604        2vpzE05 E:605-764  [code=2.40.40.20, no name defined]                                                                                                            CATH domains
           Pfam domains (1) -------Molybdop_Fe4S4-2vpzE03 E:37-91                         --Molybdopterin-2vpzE05 E:94-528                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------------------------------------------Molydop_binding-2vpzE01 E:619-738                                                                                       -------------------------- Pfam domains (1)
           Pfam domains (2) -------Molybdop_Fe4S4-2vpzE04 E:37-91                         --Molybdopterin-2vpzE06 E:94-528                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------------------------------------------Molydop_binding-2vpzE02 E:619-738                                                                                       -------------------------- Pfam domains (2)
         Sec.struct. author ........eeeeee........eeeeee....eeeeee...........hhhhhhhhhhhhh.......eee..........eee.hhhhhhhhhhhhhhhhhhhhhhhhheeee...hhhhhh.hhhhhh....eehhhhhh.hhhhhhhhhhhh..........hhhhh.eeeee........hhhhhhhhhhhhhh..eeeee......hhhhh.eee.....hhhhhhhhhhhhhhhh...hhhhhhhhee...hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh...ee...........hhhhhhhhhhhhhhhh.............................................................hhhhh.hhhhhh.......eeee..hhhhhh.hhhhhhhhhhhh..eeee....hhhhhh..eee...hhhhh.eeeeee.....eeeee...........hhhhhhhhhhhh..........hhhhhhhhhhh....hhhhhhhhh.ee.....hhhhhhh..........ee...hhhhhh....................ee.........hhhhhh.hhhhhhhh...eee.hhhhhhhh......eeeeee....eeeeeeee...............................hhhhhh...ee......ee....eeeeeee......hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz E  30 APWYAQEVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGHGTGDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLGLDLETMKGMGTLVQRGKPWLEDWEKEGRLPFGTASGKIELYCQRFKEAGHQPLPVFTPPEEPPEGFYRLLYGRSPVHTFARTQNNWVLMEMDPENEVWIHKEEAKRLGLKEGDYVMLVNQDGVKEGPVRVKPTARIRKDCVYIVHGFGHKAPLMRLAHGRGASDNYLQTRYKLDPISGGAGLRVNFVRLEKAERPRLPSLTGLAKRPFDERR 764
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759     


Chain F from PDB  Type:PROTEIN  Length:194
 aligned with Q72LA5_THET2 | Q72LA5 from UniProtKB/TrEMBL  Length:195

    Alignment length:194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    
         Q72LA5_THET2     1 MPRYAMAIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLRPEQGTRPKLFYLNAPSKKGLTRESEVHH 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzF01 F:1-63,F:116-187  [code=3.30.70.20, no name defined]   2vpzF02 F:64-115  [code=3.30.70.20, no name defined]2vpzF01 F:1-63,F:116-187  [code=3.30.70.20, no name defined]            ------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------Fer4-2vpzF01 F:83-106   ---------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------Fer4-2vpzF02 F:83-106   ---------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------Fer4_11-2vpzF03 F:49-145                                                                         ------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------Fer4_11-2vpzF04 F:49-145                                                                         ------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeee........hhhhhhhhhhh.........eeeeeee.hhhhheeeeeee..................eee.....eee........hhhhhhh.....eee...eee....hhhhhhh...hhhhhhh....eeeee.....hhhhhhhhhh...............eee................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz F   1 MPRYAMAIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLRPEQGTRPKLFYLNAPSKKGLTRESEVHH 194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    


Chain G from PDB  Type:PROTEIN  Length:251
 aligned with Q72LA6_THET2 | Q72LA6 from UniProtKB/TrEMBL  Length:253

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
         Q72LA6_THET2     2 AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQGLG 252
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vpzG00 G:1-251 Formate dehydrogenase/DMSO reductase domain                                                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vpz G   1 AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQGLG 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VPZ)

(-) CATH Domains  (7, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (5, 10)

Asymmetric/Biological Unit
(-)
Clan: 4Fe-4S (51)
(-)
Clan: AcetylDC-like (37)
(-)
Clan: no clan defined [family: Molybdop_Fe4S4] (17)
(-)
Clan: no clan defined [family: Molybdopterin] (24)

(-) Gene Ontology  (9, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,E   (Q72LA4_THET2 | Q72LA4)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,F   (Q72LA5_THET2 | Q72LA5)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

Chain C,G   (Q72LA6_THET2 | Q72LA6)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  2vpz
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q72LA4_THET2 | Q72LA4: 2vpw 2vpx 2vpy
        Q72LA5_THET2 | Q72LA5: 2vpw 2vpx 2vpy
        Q72LA6_THET2 | Q72LA6: 2vpw 2vpx 2vpy

(-) Related Entries Specified in the PDB File

2vpw POLYSULFIDE REDUCTASE WITH BOUND MENAQUINONE
2vpx POLYSULFIDE REDUCTASE WITH BOUND QUINONE (UQ1)
2vpy POLYSULFIDE REDUCTASE WITH BOUND QUINONE INHIBITOR, PENTACHLOROPHENOL (PCP)