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(-) Description

Title :  THE MONOCLINIC STRUCTURE OF PHYCOCYANIN FROM GLOEOBACTER VIOLACEUS
 
Authors :  J. W. Murray, S. Benson, J. Barber
Date :  28 Jan 08  (Deposition) - 25 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Photosynthesis, Light-Harvesting, Electron Transport, Transport, Chromophore, Bile Pigment, Phycobilisome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Murray, S. Benson, J. Nield, J. Barber
The Structures Of The Phycobiliproteins Of Gloeobacter Violaceus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHYCOCYANIN ALPHA CHAIN
    Chains: A, C, E, G, I, K
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 33072
    Other Details: PASTEUR CULTURE COLLECTION
    Strain: PCC7421
 
Molecule 2 - PHYCOCYANIN BETA CHAIN
    Chains: B, D, F, H, J, L
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 33072
    Other Details: PASTEUR CULTURE COLLECTION
    Strain: PCC7421

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1CYC18Ligand/IonPHYCOCYANOBILIN

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:60 , MET A:72 , GLY A:73 , ASN A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , PHE A:92 , TYR A:108 , VAL A:116 , PHE A:120 , LEU A:122 , TRP A:126 , TYR A:127 , HOH A:2055 , HOH A:2056 , HOH A:2057 , HOH A:2058 , HIS F:57 , ILE F:67 , TYR F:74 , PRO F:75 , ASN F:76BINDING SITE FOR RESIDUE CYC A1082
02AC2SOFTWAREASN B:72 , ALA B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , SER B:126 , VAL B:127BINDING SITE FOR RESIDUE CYC B1082
03AC3SOFTWAREASN A:21 , LEU A:24 , ASN A:28 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , VAL B:142 , PRO B:145 , VAL B:148 , THR B:149 , ARG B:150 , GLY B:151 , CYS B:153 , HOH B:2044 , HOH B:2052 , ARG K:33 , GLN K:145BINDING SITE FOR RESIDUE CYC B1153
04AC4SOFTWAREHIS B:57 , ILE B:67 , TYR B:74 , PRO B:75 , ASN B:76 , HOH B:2026 , TYR C:60 , MET C:72 , GLY C:73 , ASN C:78 , LYS C:81 , CYS C:82 , ARG C:84 , ASP C:85 , HIS C:88 , PHE C:92 , TYR C:108 , VAL C:116 , PHE C:120 , LEU C:122 , TRP C:126 , TYR C:127 , HOH C:2076 , HOH C:2077BINDING SITE FOR RESIDUE CYC C1082
05AC5SOFTWAREASN D:72 , ALA D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:113 , LEU D:120 , SER D:126BINDING SITE FOR RESIDUE CYC D1082
06AC6SOFTWAREASN C:21 , LEU C:24 , ASN C:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , VAL D:142 , ASN D:143 , PRO D:145 , VAL D:148 , THR D:149 , ARG D:150 , GLY D:151 , CYS D:153 , HOH D:2059 , HOH D:2060 , ARG G:33 , GLN G:145BINDING SITE FOR RESIDUE CYC D1153
07AC7SOFTWAREHIS D:57 , ILE D:67 , TYR D:74 , PRO D:75 , ASN D:76 , HOH D:2031 , TYR E:60 , MET E:72 , GLY E:73 , ASN E:78 , LYS E:81 , CYS E:82 , ARG E:84 , ASP E:85 , HIS E:88 , PHE E:92 , TYR E:108 , VAL E:116 , PHE E:120 , LEU E:122 , TRP E:126 , TYR E:127 , HOH E:2050 , HOH E:2051BINDING SITE FOR RESIDUE CYC E1082
08AC8SOFTWAREASN F:72 , ALA F:73 , ARG F:77 , ARG F:78 , ALA F:81 , CYS F:82 , ARG F:84 , ASP F:85 , ILE F:88 , ARG F:108 , LEU F:113 , LEU F:120 , SER F:126 , VAL F:127 , ALA F:130BINDING SITE FOR RESIDUE CYC F1082
09AC9SOFTWAREASN E:21 , LEU E:24 , ASN E:28 , ASN F:35 , LYS F:36 , LEU F:38 , ASP F:39 , VAL F:142 , ASN F:143 , PRO F:145 , VAL F:148 , THR F:149 , ARG F:150 , GLY F:151 , CYS F:153 , HOH F:2061 , HOH F:2062 , ARG I:33 , GLN I:145BINDING SITE FOR RESIDUE CYC F1153
10BC1SOFTWARETYR G:60 , MET G:72 , GLY G:73 , ASN G:78 , LYS G:81 , CYS G:82 , ARG G:84 , ASP G:85 , HIS G:88 , PHE G:92 , TYR G:108 , VAL G:116 , PHE G:120 , LEU G:122 , TRP G:126 , TYR G:127 , HOH G:2044 , HOH G:2045 , HOH G:2046 , HIS J:57 , ILE J:67 , TYR J:74 , PRO J:75 , ASN J:76BINDING SITE FOR RESIDUE CYC G1082
11BC2SOFTWAREASN H:72 , ALA H:73 , ARG H:77 , ARG H:78 , ALA H:81 , CYS H:82 , ARG H:84 , ASP H:85 , ILE H:88 , ARG H:108 , LEU H:113 , LEU H:120 , SER H:126 , VAL H:127 , ALA H:130BINDING SITE FOR RESIDUE CYC H1082
12BC3SOFTWAREARG C:33 , GLN C:145 , ASN G:21 , LEU G:24 , ASN G:28 , ASN H:35 , LYS H:36 , LEU H:38 , ASP H:39 , VAL H:142 , ASN H:143 , PRO H:145 , VAL H:148 , THR H:149 , ARG H:150 , GLY H:151 , CYS H:153 , HOH H:2053 , HOH H:2054 , HOH H:2055 , HOH H:2056BINDING SITE FOR RESIDUE CYC H1153
13BC4SOFTWARETYR I:60 , MET I:72 , GLY I:73 , ASN I:78 , LYS I:81 , CYS I:82 , ARG I:84 , ASP I:85 , HIS I:88 , PHE I:92 , TYR I:108 , VAL I:116 , PHE I:120 , LEU I:122 , TRP I:126 , TYR I:127 , HOH I:2047 , HOH I:2070 , HOH I:2071 , HIS L:57 , ILE L:67 , TYR L:74 , PRO L:75 , ASN L:76BINDING SITE FOR RESIDUE CYC I1082
14BC5SOFTWAREASN J:72 , ALA J:73 , ARG J:77 , ARG J:78 , ALA J:81 , CYS J:82 , ARG J:84 , ASP J:85 , ILE J:88 , ARG J:108 , LEU J:113 , LEU J:120 , SER J:126 , VAL J:127 , ALA J:130BINDING SITE FOR RESIDUE CYC J1082
15BC6SOFTWAREARG E:33 , GLN E:145 , ASN I:21 , LEU I:24 , ASN I:28 , ASN J:35 , LYS J:36 , LEU J:38 , ASP J:39 , VAL J:142 , ASN J:143 , PRO J:145 , VAL J:148 , THR J:149 , ARG J:150 , GLY J:151 , CYS J:153 , HOH J:2072 , HOH J:2073BINDING SITE FOR RESIDUE CYC J1153
16BC7SOFTWAREHIS H:57 , ILE H:67 , TYR H:74 , PRO H:75 , ASN H:76 , HOH H:2024 , TYR K:60 , MET K:72 , GLY K:73 , ASN K:78 , LYS K:81 , CYS K:82 , ARG K:84 , ASP K:85 , HIS K:88 , PHE K:92 , TYR K:108 , VAL K:116 , PHE K:120 , LEU K:122 , TRP K:126 , TYR K:127 , HOH K:2056 , HOH K:2057BINDING SITE FOR RESIDUE CYC K1082
17BC8SOFTWAREASN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , LEU L:113 , LEU L:120 , SER L:126 , VAL L:127 , ALA L:130BINDING SITE FOR RESIDUE CYC L1082
18BC9SOFTWAREARG A:33 , GLN A:145 , ASN K:21 , LEU K:24 , ASN K:28 , ASN L:35 , LYS L:36 , LEU L:38 , ASP L:39 , VAL L:142 , ASN L:143 , PRO L:145 , VAL L:148 , THR L:149 , ARG L:150 , GLY L:151 , CYS L:153 , HOH L:2010 , HOH L:2039 , HOH L:2046BINDING SITE FOR RESIDUE CYC L1153

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VML)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Tyr B:74 -Pro B:75
2Tyr D:74 -Pro D:75
3Tyr F:74 -Pro F:75
4Tyr H:74 -Pro H:75
5Tyr J:74 -Pro J:75
6Tyr L:74 -Pro L:75

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VML)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VML)

(-) Exons   (0, 0)

(no "Exon" information available for 2VML)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmla_ A: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml A   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain B from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmlb_ B: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlB00 B:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml B   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmlc_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml C   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain D from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmld_ D: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlD00 D:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml D   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain E from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmle_ E: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml E   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain F from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmlf_ F: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlF00 F:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml F   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain G from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmlg_ G: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml G   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain H from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmlh_ H: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlH00 H:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml H   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain I from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmli_ I: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml I   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain J from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmlj_ J: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlJ00 J:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml J   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain K from PDB  Type:PROTEIN  Length:162
 aligned with Q7M7F7_GLOVI | Q7M7F7 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q7M7F7_GLOVI     1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
               SCOP domains d2vmlk_ K: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vml K   1 MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain L from PDB  Type:PROTEIN  Length:172
 aligned with Q7M7C7_GLOVI | Q7M7C7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q7M7C7_GLOVI     1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
               SCOP domains d2vmll_ L: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2vmlL00 L:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vml L   1 MQDAFTKAIVAADLRGSFLSEQELNQLTNLVKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSGVTRGDCSALVNEAATYFDKAAASIA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2VML)

(-) Gene Ontology  (4, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (Q7M7F7_GLOVI | Q7M7F7)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.

Chain B,D,F,H,J,L   (Q7M7C7_GLOVI | Q7M7C7)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7M7C7_GLOVI | Q7M7C7: 2vjr
        Q7M7F7_GLOVI | Q7M7F7: 2vjr

(-) Related Entries Specified in the PDB File

2vjr THE STRUCTURE OF PHYCOCYANIN FROM GLOEOBACTER VIOLACEUS