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(-) Description

Title :  STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA-MANNOSIDASES
 
Authors :  L. E. Tailford, W. A. Offen, N. L. Smith, C. Dumon, C. Moreland, J. Gratien, M. P. Heck, R. V. Stick, Y. Bleriot, A. Vasella, H. J. Gilbert, G. J. Davies
Date :  25 Jan 08  (Deposition) - 01 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Linear Free Energy Relationship, Transition State Mimic, Mannosidase, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. E. Tailford, W. A. Offen, N. L. Smith, C. Dumon, C. Morland, J. Gratien, M. P. Heck, R. V. Stick, Y. Bleriot, A. Vasella, H. J. Gilbert, G. J. Davies
Structural And Biochemical Evidence For A Boat-Like Transition State In Beta-Mannosidases.
Nat. Chem. Biol. V. 4 306 2008
PubMed-ID: 18408714  |  Reference-DOI: 10.1038/NCHEMBIO.81

(-) Compounds

Molecule 1 - BETA-MANNOSIDASE
    Atcc29148
    ChainsA, B
    EC Number3.2.1.25
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentRESIDUES 26-864
    Organism ScientificBACTEROIDES THETAIOTAOMICRON
    Organism Taxid226186
    Other DetailsC-TERMINAL HIS-TAGGED BETA-MANNOSIDASE
    StrainVPI-5482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 69)

Asymmetric Unit (4, 69)
No.NameCountTypeFull Name
1BR16Ligand/IonBROMIDE ION
2CL11Ligand/IonCHLORIDE ION
3EDO40Ligand/Ion1,2-ETHANEDIOL
4MVL2Ligand/Ion(5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDRO-1H-IMIDAZO[1,2-A]PYRIDIN-4-IUM
Biological Unit 1 (2, 22)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO21Ligand/Ion1,2-ETHANEDIOL
4MVL1Ligand/Ion(5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDRO-1H-IMIDAZO[1,2-A]PYRIDIN-4-IUM
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO19Ligand/Ion1,2-ETHANEDIOL
4MVL1Ligand/Ion(5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDRO-1H-IMIDAZO[1,2-A]PYRIDIN-4-IUM

(-) Sites  (67, 67)

Asymmetric Unit (67, 67)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:198 , ASP A:199 , TRP A:200 , TRP A:395 , ASN A:461 , GLU A:462 , TRP A:533 , TYR A:537 , GLU A:555 , TRP A:645 , TRP A:656 , EDO A:1876BINDING SITE FOR RESIDUE MVL A1865
02AC2SOFTWAREGLN A:365 , ASN A:648 , ASP A:649 , ILE A:659 , ASP A:660BINDING SITE FOR RESIDUE EDO A1866
03AC3SOFTWARETRP A:519 , TRP A:525 , SER A:530 , ASN A:532 , ASP A:548 , PRO A:550 , MET A:553 , HOH A:2461BINDING SITE FOR RESIDUE EDO A1867
04AC4SOFTWAREILE A:328 , GLY A:329 , ASN A:450 , HIS A:451 , ALA A:452 , ARG A:507BINDING SITE FOR RESIDUE EDO A1868
05AC5SOFTWAREGLN A:230 , ARG A:331 , ASP A:506 , ARG A:507 , HOH A:2462 , HOH A:2463BINDING SITE FOR RESIDUE EDO A1869
06AC6SOFTWAREGLU A:465 , LYS A:468 , TYR A:469 , PRO A:514 , LEU A:516 , ALA A:517 , ASN A:518BINDING SITE FOR RESIDUE EDO A1870
07AC7SOFTWAREARG A:597 , PRO A:607 , GLU A:608 , SER A:609 , PHE A:610 , PHE A:613 , HOH A:2336BINDING SITE FOR RESIDUE EDO A1871
08AC8SOFTWAREASN A:337 , HIS A:511 , TYR A:515 , HOH A:2464 , HOH A:2465BINDING SITE FOR RESIDUE EDO A1872
09AC9SOFTWAREARG A:634 , GLN A:686 , TYR A:693 , HOH A:2321BINDING SITE FOR RESIDUE EDO A1873
10BC1SOFTWARESER A:825 , THR A:842 , HOH A:2466BINDING SITE FOR RESIDUE EDO A1874
11BC2SOFTWARESER A:43 , GLN A:44 , SER A:45 , GLY A:46 , THR A:47 , GLU A:48 , GLU A:90BINDING SITE FOR RESIDUE EDO A1875
12BC3SOFTWAREASN A:178 , ASP A:199 , CYS A:424 , GLU A:462 , TRP A:470 , MVL A:1865BINDING SITE FOR RESIDUE EDO A1876
13BC4SOFTWAREPHE A:775 , PHE A:776BINDING SITE FOR RESIDUE EDO A1877
14BC5SOFTWAREHIS A:326 , ARG A:327 , ASP A:407 , ASN A:450 , HIS A:451 , HOH A:2249 , HOH A:2275 , HOH A:2467BINDING SITE FOR RESIDUE EDO A1878
15BC6SOFTWAREPHE A:42 , SER A:43 , GLN A:44 , THR A:47 , LYS A:49BINDING SITE FOR RESIDUE EDO A1879
16BC7SOFTWAREASP A:88 , HIS A:157 , ARG A:161 , ARG B:161BINDING SITE FOR RESIDUE EDO A1880
17BC8SOFTWAREHIS A:284BINDING SITE FOR RESIDUE BR A1882
18BC9SOFTWAREILE A:107 , LYS A:142BINDING SITE FOR RESIDUE BR A1881
19CC1SOFTWAREHIS A:284BINDING SITE FOR RESIDUE BR A1882
20CC2SOFTWAREGLN A:108BINDING SITE FOR RESIDUE BR A1884
21CC3SOFTWAREGLN A:685 , ASP A:688BINDING SITE FOR RESIDUE BR A1885
22CC4SOFTWARETHR A:477BINDING SITE FOR RESIDUE BR A1886
23CC5SOFTWAREILE A:684 , GLN A:685 , HOH A:2392BINDING SITE FOR RESIDUE CL A1887
24CC6SOFTWARETYR A:347 , PRO A:637 , MET A:640 , HOH A:2370 , HOH A:2468BINDING SITE FOR RESIDUE EDO A1888
25CC7SOFTWAREGLN A:577 , ILE A:578 , GLU A:579BINDING SITE FOR RESIDUE BR A1889
26CC8SOFTWAREASN A:402BINDING SITE FOR RESIDUE BR A1890
27CC9SOFTWAREARG A:447 , HOH A:2269BINDING SITE FOR RESIDUE CL A1891
28DC1SOFTWAREGLU A:708 , MET A:709 , LYS A:710 , LYS A:758 , ILE A:760BINDING SITE FOR RESIDUE EDO A1892
29DC2SOFTWAREASP A:105 , VAL A:250 , GLN A:252BINDING SITE FOR RESIDUE EDO A1893
30DC3SOFTWAREARG A:626BINDING SITE FOR RESIDUE BR A1894
31DC4SOFTWAREASP A:119 , LYS A:129 , HIS A:157 , GLN A:162 , ASP B:119 , LYS B:129 , HIS B:157 , GLN B:162BINDING SITE FOR RESIDUE EDO A1895
32DC5SOFTWAREARG A:296 , MET A:298 , THR A:304 , THR A:306BINDING SITE FOR RESIDUE EDO A1896
33DC6SOFTWAREASN A:77 , HOH A:2018 , HOH A:2032BINDING SITE FOR RESIDUE CL A1897
34DC7SOFTWARETRP B:198 , ASP B:199 , TRP B:200 , TRP B:395 , ASN B:461 , GLU B:462 , TRP B:533 , TYR B:537 , GLU B:555 , TRP B:645 , TRP B:656 , EDO B:1874BINDING SITE FOR RESIDUE MVL B1868
35DC8SOFTWARETRP B:519 , TRP B:525 , SER B:530 , ASN B:532 , ASP B:548 , PRO B:550BINDING SITE FOR RESIDUE EDO B1869
36DC9SOFTWAREARG B:331 , ASP B:506 , ARG B:507 , EDO B:1899 , HOH B:2218 , HOH B:2472BINDING SITE FOR RESIDUE EDO B1870
37EC1SOFTWARESER B:43 , GLN B:44 , GLY B:46 , THR B:47 , GLU B:48 , GLU B:90BINDING SITE FOR RESIDUE EDO B1871
38EC2SOFTWAREGLN B:365 , ASN B:648 , ASP B:649 , ILE B:659 , ASP B:660BINDING SITE FOR RESIDUE EDO B1872
39EC3SOFTWAREGLU B:465 , LYS B:468 , TYR B:469 , PRO B:514 , LEU B:516 , ALA B:517 , ASN B:518BINDING SITE FOR RESIDUE EDO B1873
40EC4SOFTWAREASN B:178 , ASP B:199 , CYS B:424 , GLU B:462 , TRP B:470 , MVL B:1868BINDING SITE FOR RESIDUE EDO B1874
41EC5SOFTWAREPHE B:356 , ARG B:633 , ARG B:636 , ILE B:695 , SER B:696 , ASP B:697 , ASN B:733 , THR B:734BINDING SITE FOR RESIDUE EDO B1875
42EC6SOFTWAREILE B:328 , GLY B:329 , ARG B:449 , ASN B:450 , HIS B:451 , ALA B:452 , ARG B:507BINDING SITE FOR RESIDUE EDO B1876
43EC7SOFTWAREPHE B:775 , ARG B:777 , LYS B:778 , HOH B:2473BINDING SITE FOR RESIDUE EDO B1877
44EC8SOFTWAREPHE B:42 , SER B:43 , GLN B:44 , THR B:47 , LYS B:49BINDING SITE FOR RESIDUE EDO B1878
45EC9SOFTWAREILE B:107 , LYS B:142 , HOH B:2084BINDING SITE FOR RESIDUE BR B1879
46FC1SOFTWAREGLN B:685 , ASP B:688BINDING SITE FOR RESIDUE BR B1880
47FC2SOFTWAREHOH B:2320BINDING SITE FOR RESIDUE BR B1881
48FC3SOFTWARETHR B:477BINDING SITE FOR RESIDUE BR B1882
49FC4SOFTWARETYR B:443 , ARG B:446BINDING SITE FOR RESIDUE CL B1883
50FC5SOFTWAREHIS B:181 , HOH B:2116BINDING SITE FOR RESIDUE CL B1884
51FC6SOFTWAREGLN B:108BINDING SITE FOR RESIDUE CL B1885
52FC7SOFTWAREGLN B:685 , HOH B:2404BINDING SITE FOR RESIDUE CL B1886
53FC8SOFTWAREARG B:376 , TYR B:661BINDING SITE FOR RESIDUE EDO B1888
54FC9SOFTWAREHIS B:326 , ARG B:327 , ASP B:407 , ASN B:450 , HIS B:451 , HOH B:2212 , HOH B:2288 , HOH B:2474BINDING SITE FOR RESIDUE EDO B1889
55GC1SOFTWAREPRO B:637 , HOH B:2385 , HOH B:2475BINDING SITE FOR RESIDUE EDO B1890
56GC2SOFTWAREASN B:300 , ASN B:390 , HOH B:2234BINDING SITE FOR RESIDUE BR B1891
57GC3SOFTWAREMET B:298 , TRP B:302 , ASN B:351BINDING SITE FOR RESIDUE CL B1892
58GC4SOFTWAREGLN B:324 , SER B:325 , HOH B:2209BINDING SITE FOR RESIDUE CL B1893
59GC5SOFTWAREASN B:261 , HOH B:2477BINDING SITE FOR RESIDUE EDO B1894
60GC6SOFTWAREARG B:626 , HOH B:2473BINDING SITE FOR RESIDUE BR B1901
61GC7SOFTWARELEU B:307 , ASP B:309 , ARG B:327 , HOH B:2167BINDING SITE FOR RESIDUE EDO B1895
62GC8SOFTWARELYS B:565 , THR B:817 , PRO B:818 , HOH B:2354 , HOH B:2478BINDING SITE FOR RESIDUE EDO B1896
63GC9SOFTWAREGLN B:577 , ILE B:578BINDING SITE FOR RESIDUE CL B1897
64HC1SOFTWAREILE B:282 , HIS B:284 , HOH B:2479BINDING SITE FOR RESIDUE EDO B1898
65HC2SOFTWAREGLN B:230 , LEU B:231 , THR B:332 , ASP B:506 , EDO B:1870 , HOH B:2480BINDING SITE FOR RESIDUE EDO B1899
66HC3SOFTWARETRP B:665 , TYR B:670 , ARG B:823 , TYR B:824 , HOH B:2481BINDING SITE FOR RESIDUE EDO B1900
67HC4SOFTWAREASN A:300 , TRP A:302 , PHE A:356 , LYS A:358 , ASN A:390 , ASP A:697 , HOH A:2217BINDING SITE FOR RESIDUE EDO A1899

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VMF)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Val A:55 -Pro A:56
2Asp A:115 -Thr A:116
3Ser A:513 -Pro A:514
4Arg A:636 -Pro A:637
5Trp A:645 -Gln A:646
6Val B:55 -Pro B:56
7Asp B:115 -Thr B:116
8Ser B:513 -Pro B:514
9Arg B:636 -Pro B:637
10Trp B:645 -Gln B:646

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VMF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VMF)

(-) Exons   (0, 0)

(no "Exon" information available for 2VMF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:835
 aligned with Q8AAK6_BACTN | Q8AAK6 from UniProtKB/TrEMBL  Length:864

    Alignment length:837
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       
         Q8AAK6_BACTN    28 NDTSEVMLLDTGWEFSQSGTEKWMPATVPGTVHQDLISHELLPNPFYGMNEKKIQWVENEDWEYRTSFIVSEEQLNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVKSVLRKGENHLYIYFHSPIRQTLPQYASNGFNYPADNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVWRPVTLRFYDIATISDYYVRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKDKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVMNAHQKSSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMRHGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVYRAKLDGWLTPEDCRRSFLKLILKDKSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGARYSDNFFDLLPGERKKVIITSPRIKKGEELPVNIKHIRETYK 864
               SCOP domains d2vmfa4 A:28-219 automated matches                                                                                                                                                              d2vmfa1 A:220-330 automated matches                                                                            d2vmfa5 A:331-678 automated matches                                                                                                                                                                                                                                                                                                                         d2vmfa3 A:679-783 automated matches                                                                      d2vmfa2 A:784-864 automated matches                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeee......eee....hhhhhhhhh..............hhhhhhh.eeeeeeeeehhhhhh..eeeeee..ee.eeeeee..eeeeeee.....eeee.......eeeeeeeee.hhhhhhhhhhhh...............hhhhh..hhhhhh..........ee...eeeeee..eeeeeeeeeeeee...eeeeeeeeeeee.....eeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeee...............eeeeeeee..-.eeeeeeeee....eeee..ee..ee..eeee..eee.eeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee...........hhhh...eee.........hhhhhhh....eeee.......hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.....................hhhhhhhhhhh..eeeeeeee..eeeeeeee.....eeeeeeeeeeee....eeeeeeeeeeeee...eeeeeeeee.....hhhhhh.eeeeeeee.....eeeeeeee..hhhhh.......eeeeeee..eeeeeee....eeeeeee......ee....eee.....eeeeee.......-....eeehhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vmf A  28 NDTSEVMLLDTGWEFSQSGTEKWMPATVPGTVHQDLISHELLPNPFYGMNEKKIQWVENEDWEYRTSFIVSEEQLNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVKSVLRKGENHLYIYFHSPIRQTLPQYASNGFNYPADNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVWRPVTLRFYDIATISDYYVRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQIACG-RIVAEQSHRIGLRTIRVVNEKDKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVMNAHQKSSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMRHGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVYRAKLDGWLTPEDCRRSFLKLILKDKSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGARYSDNFFDLLPGERKKVIITSPRIKKG-ELPVNIKHIRETYK 864
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 |     327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847 | |   857       
                                                                                                                                                                                                                                                                                                                           317 |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               849 |             
                                                                                                                                                                                                                                                                                                                             319                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 851             

Chain B from PDB  Type:PROTEIN  Length:840
 aligned with Q8AAK6_BACTN | Q8AAK6 from UniProtKB/TrEMBL  Length:864

    Alignment length:841
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               864   
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       | - 
         Q8AAK6_BACTN    27 GNDTSEVMLLDTGWEFSQSGTEKWMPATVPGTVHQDLISHELLPNPFYGMNEKKIQWVENEDWEYRTSFIVSEEQLNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVKSVLRKGENHLYIYFHSPIRQTLPQYASNGFNYPADNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVWRPVTLRFYDIATISDYYVRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKDKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVMNAHQKSSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMRHGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVYRAKLDGWLTPEDCRRSFLKLILKDKSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGARYSDNFFDLLPGERKKVIITSPRIKKGEELPVNIKHIRETYK---   -
               SCOP domains d2vmfb4 B:27-219 automated matches                                                                                                                                                               d2vmfb1 B:220-330 automated matches                                                                            d2vmfb5 B:331-678 automated matches                                                                                                                                                                                                                                                                                                                         d2vmfb3 B:679-783 automated matches                                                                      d2vmfb2 B:784-867 automated matches                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....eeee......ee.....hhhhhhhhh...........hhhhhhhhhh.eeeeeeeeehhhhhh..eeeeee..ee.eeeeee..eeeee.......eeee.hhhh..eeeeeeeeeehhhhhhhhhhhhhh............hhhhhh..hhhhhh..........ee...eeeeee..eeeeeeeeeeeee...eeeeeeeeeeee.....eeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeee...............eeeeeeeee..eeeeeeeeee....eeee..ee..ee..eeee..eee.eeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee..........hhhhh....ee.........hhhhhhh.....eee.......hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.....................hhhhhhhhhhh..eeeeeeee..eeeeeeee.....eeeeeeeeeeee....eeeeeeeeeeeee...eeeeeeeee.....hhhhhh.eeeeeeee.-...eeeeeeee..hhhhh.......eeeeeee..eeeeeee....eeeeeee......ee....eee.....eeeeee............eeehhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vmf B  27 GNDTSEVMLLDTGWEFSQSGTEKWMPATVPGTVHQDLISHELLPNPFYGMNEKKIQWVENEDWEYRTSFIVSEEQLNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVKSVLRKGENHLYIYFHSPIRQTLPQYASNGFNYPADNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVWRPVTLRFYDIATISDYYVRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKDKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVMNAHQKSSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMRHGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVYRAKLDGWLTPEDCRRSFLKLILKD-SGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGARYSDNFFDLLPGERKKVIITSPRIKKGEELPVNIKHIRETYKEHH 867
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756      |766       776       786       796       806       816       826       836       846       856       866 
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 Classification and Annotation

(-) SCOP Domains  (3, 10)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VMF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2VMF)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8AAK6_BACTN | Q8AAK6)
molecular function
    GO:0004567    beta-mannosidase activity    Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8AAK6_BACTN | Q8AAK62je8 2vjx 2vl4 2vo5 2vot 2vqt 2vqu 2vr4 2wbk

(-) Related Entries Specified in the PDB File

2je8 STRUCTURE OF A BETA-MANNOSIDASE FROM BACTEROIDES THETAIOTAOMICRON
2vjx STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES
2vl4 STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES
2vo5 STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES
2vot STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES
2vqt STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES
2vqu STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA- MANNOSIDASES