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(-) Description

Title :  BARLEY ALDOSE REDUCTASE 1 COMPLEX WITH BUTANOL
 
Authors :  J. G. Olsen, L. Pedersen, C. L. Christensen, O. Olsen, A. Henriksen
Date :  08 Oct 07  (Deposition) - 11 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Stress Response, Aldose Reductase, Aldo-Keto Reductase, Nadp, Akr4C, Ligand Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Olsen, L. Pedersen, C. L. Christensen, O. Olsen, A. Henriksen
Barley Aldose Reductase: Structure, Cofactor Binding, And Substrate Recognition In The Aldo/Keto Reductase 4C Family.
Proteins: Struct. , Funct. , V. 71 1572 2008 Bioinf.
PubMed-ID: 18300247  |  Reference-DOI: 10.1002/PROT.21996
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALDOSE REDUCTASE
    Chains: A
    EC Number: 1.1.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 2-320
    Organism Common: BARLEY
    Organism Scientific: HORDEUM VULGARE
    Organism Taxid: 4513
    Strain: AURA
    Synonym: AR, ALDEHYDE REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
11BO2Ligand/Ion1-BUTANOL
2NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:30 , THR A:31 , TRP A:32 , ASP A:55 , TYR A:60 , LYS A:88 , HIS A:121 , CYS A:166 , ASN A:167 , GLN A:188 , TYR A:214 , SER A:215 , PRO A:216 , LEU A:217 , GLY A:218 , SER A:219 , SER A:220 , ASN A:223 , ALA A:225 , ILE A:257 , PRO A:258 , LYS A:259 , SER A:260 , SER A:261 , LYS A:262 , ARG A:265 , GLU A:268 , ASN A:269 , LEU A:295 , 1BO A:1325 , HOH A:2015 , HOH A:2222 , HOH A:2223 , HOH A:2224 , HOH A:2225BINDING SITE FOR RESIDUE NDP A1321
2AC2SOFTWAREVAL A:170 , ASN A:174 , LYS A:206 , HOH A:2146BINDING SITE FOR RESIDUE SO4 A1322
3AC3SOFTWARELYS A:262 , ARG A:265 , HOH A:2225BINDING SITE FOR RESIDUE SO4 A1323
4AC4SOFTWARETHR A:171 , ASN A:174 , ARG A:178 , HOH A:2124BINDING SITE FOR RESIDUE SO4 A1324
5AC5SOFTWARETRP A:32 , GLU A:59 , TYR A:60 , TRP A:122 , ASN A:235 , ASN A:238 , LEU A:295 , NDP A:1321BINDING SITE FOR RESIDUE 1BO A1325
6AC6SOFTWAREGLU A:135 , ALA A:136 , ASN A:303 , HIS A:306 , HOH A:2123 , HOH A:2175BINDING SITE FOR RESIDUE 1BO A1326

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VDG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:132 -Pro A:133
2Gly A:307 -Pro A:308

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VDG)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDOKETO_REDUCTASE_1PS00798 Aldo/keto reductase family signature 1.ALDR_HORVU50-67  1A:50-67
2ALDOKETO_REDUCTASE_2PS00062 Aldo/keto reductase family signature 2.ALDR_HORVU151-168  1A:151-168
3ALDOKETO_REDUCTASE_3PS00063 Aldo/keto reductase family putative active site signature.ALDR_HORVU257-272  1A:257-272

(-) Exons   (0, 0)

(no "Exon" information available for 2VDG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
 aligned with ALDR_HORVU | P23901 from UniProtKB/Swiss-Prot  Length:320

    Alignment length:308
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312        
           ALDR_HORVU    13 QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHVTAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSAADVWDHEN 320
               SCOP domains d2vdga_ A: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2vdgA00 A:13-320 NADP-dependent oxidoreductase                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains -------------Aldo_ket_red-2vdgA01 A:26-290                                                                                                                                                                                                                                            ------------------------------ Pfam domains
         Sec.struct. author ..eee.....eeeeeeee...hhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee....ee............ee..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh.....eeeee......hhhhhhhhhhh..eeeee............hhhhhhhhhhhh.hhhhhhhhhhhhhh.eeee...hhhhhhhh........hhhhhhhhhhh........hhhhhh........hhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------ALDOKETO_REDUCTASE-----------------------------------------------------------------------------------ALDOKETO_REDUCTASE----------------------------------------------------------------------------------------ALDOKETO_REDUCTA------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdg A  13 QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSARDVWDHEN 320
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312        


Chain A from PDB  Type:PROTEIN  Length:308
 aligned with Q42837_HORVU | Q42837 from UniProtKB/TrEMBL  Length:320

    Alignment length:308
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312        
         Q42837_HORVU    13 QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSARDVWDHEN 320
               SCOP domains d2vdga_ A: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2vdgA00 A:13-320 NADP-dependent oxidoreductase                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains -------------Aldo_ket_red-2vdgA01 A:26-290                                                                                                                                                                                                                                            ------------------------------ Pfam domains
         Sec.struct. author ..eee.....eeeeeeee...hhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee....ee............ee..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh.....eeeee......hhhhhhhhhhh..eeeee............hhhhhhhhhhhh.hhhhhhhhhhhhhh.eeee...hhhhhhhh........hhhhhhhhhhh........hhhhhh........hhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdg A  13 QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSARDVWDHEN 320
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Aldo_ket_red] (94)

(-) Gene Ontology  (3, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ALDR_HORVU | P23901)
molecular function
    GO:0004032    alditol:NADP+ 1-oxidoreductase activity    Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A   (Q42837_HORVU | Q42837)
molecular function
    GO:0004032    alditol:NADP+ 1-oxidoreductase activity    Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Q42837_HORVU | Q42837
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALDR_HORVU | P23901: 2bgq 2bgs
        Q42837_HORVU | Q42837: 2bgq 2bgs

(-) Related Entries Specified in the PDB File

2bgq APO ALDOSE REDUCTASE FROM BARLEY
2bgs HOLO ALDOSE REDUCTASE FROM BARLEY