2VC0 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   FEAST OR FAMINE REGULATORY PROTEIN (RV3291C)FROM M. TUBERCULOSIS COMPLEXED WITH L-LEUCINE

Authors :   T. Shrivastava, R. Ramachandran

Date :   18 Sep 07 (Deposition) - 06 Nov 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Feast/Famine Regulatory Protein, Dna-Binding Protein, M. Tuberculosis, Leucine Complex, Transcription Regulator, Transcription Regulation, Lrp, Rv3291C, Dna-Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Shrivastava, R. Ramachandran
Mechanistic Insights From The Crystal Structures Of A Feast/Famine Regulatory Protein From Mycobacterium Tuberculosis H37Rv.
Nucleic Acids Res. V. 35 7324 2007
PubMed-ID: 17962306 | Reference-DOI: 10.1093/NAR/GKM850

Molecule 1 - TRANSCRIPTIONAL REGULATORY PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	RV3291C, ASNC-FAMILY, LEUCINE-RESPONSIVE REGULATORY PROTEIN

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	LEU	1	Mod. Amino Acid	LEUCINE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:101 , GLY A:102 , GLU A:104 , SER A:105 , LEU B:122 , ARG B:126 , THR B:133 , SER B:135	BINDING SITE FOR RESIDUE LEU A1151

(no "SS Bond" information available for 2VC0)

(no "Cis Peptide Bond" information available for 2VC0)

(no "SAP(SNP)/Variant" information available for 2VC0)

(no "PROSITE Motif" information available for 2VC0)

(no "Exon" information available for 2VC0)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:148
 aligned with P96896_MYCTO | P96896 from UniProtKB/TrEMBL  Length:150

    Alignment length:148
                                                                                                                                                                            150 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143      | 
        P96896_MYCTO      4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQRIRTTANVRTRSTIILNTFYSDRQHIP-    -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --2vc0A01 A:6-57                                      2vc0A02 A:58-138  [code=3.30.70.920, no name defined]                            ------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee........eeeeeeeee.......hhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhhhhheeeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2vc0 A    4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQRIRTTANVRTRSTIILNTFYSDRQHIPL 1151
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143      ||
                                                                                                                                                                            150|
                                                                                                                                                                            1151

Chain B from PDB  Type:PROTEIN  Length:147
 aligned with P96896_MYCTO | P96896 from UniProtKB/TrEMBL  Length:150

    Alignment length:147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       
        P96896_MYCTO      4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQRIRTTANVRTRSTIILNTFYSDRQHIP  150
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --2vc0B01 B:6-57                                      2vc0B02 B:58-138  [code=3.30.70.920, no name defined]                            ------------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhh..eeeeeeee........eeeeeeeee.......hhhhhhh....eeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2vc0 B    4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQRIRTTANVRTRSTIILNTFYSDRQHIP  150
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2VC0)

(no "Pfam Domain" information available for 2VC0)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (P96896_MYCTO | P96896)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2vc0)

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	2vc0
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	P96896_MYCTO \| P96896
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UniProtKB/TrEMBL
	P96896_MYCTO \| P96896	:	2ivm 2qz8 2vbw 2vbx 2vby 2vbz 2vc1 2w24 2w25 2w29

2ivm	CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR
2vbw	FEAST OR FAMINE REGULATORY PROTEIN (RV3291C) FROM M. TUBERCULOSIS COMPLEXED WITH L- PHENYLALANINE
2vbx	FEAST OR FAMINE REGULATORY PROTEIN (RV3291C) FROM M. TUBERCULOSIS COMPLEXED WITH L- HISTIDINE
2vby	FEAST OR FAMINE REGULATORY PROTEIN (RV3291C) FROM M. TUBERCULOSIS COMPLEXED WITH L- TYROSINE
2vbz	FEAST OR FAMINE REGULATORY PROTEIN (RV3291C) FROM M. TUBERCULOSIS COMPLEXED WITH L- TRYPTOPHAN
2vc1	FEAST OR FAMINE REGULATORY PROTEIN (RV3291C) FROM M. TUBERCULOSIS COMPLEXED WITH L- METHIONINE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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