2V9C - JenaLib

Title :   X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A PSEUDOMONAS AERUGINOSA AZOREDUCTASE IN COMPLEX WITH METHYL RED.

Authors :   C. -J. Wang, C. Hagemeier, N. Rahman, E. D. Lowe, M. E. M. Noble, M. Cought E. Sim, I. M. Westwood

Date :   23 Aug 07 (Deposition) - 13 Nov 07 (Release) - 29 Jun 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.18

Chains :   Asym./Biol. Unit : A,B

Keywords :   Fmn, Nad, Flavodoxin, Flavoprotein, Oxidoreductase, Nadph-Dependent, Flavin Mononucleotide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. -J. Wang, C. Hagemeier, N. Rahman, E. D. Lowe, M. E. M. Noble, M. Coughtrie, E. Sim, I. M. Westwood
Molecular Cloning, Characterisation And Ligand- Bound Structure Of An Azoreductase From Pseudomonas Aeruginosa
J. Mol. Biol. V. 373 1213 2007
PubMed-ID: 17904577 | Reference-DOI: 10.1016/J.JMB.2007.08.048

Compounds

Molecule 1 - FMN-DEPENDENT NADH-AZOREDUCTASE 1
	Chains	:	A, B
	EC Number	:	1.7.1.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYSS
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	208964
	Other Details	:	FMN AND METHYL RED COMPLEX
	Strain	:	PAO1
	Synonym	:	FMN-DEPENDENT NADH-AZO COMPOUND OXIDOREDUCTASE 1, AZO-DYE REDUCTASE 1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Asymmetric/Biological Unit (3, 7)

No.	Name	Count	Type	Full Name
1	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	GOL	3	Ligand/Ion	GLYCEROL
3	MRE	2	Ligand/Ion	2-(4-DIMETHYLAMINOPHENYL)DIAZENYLBENZOIC ACID

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:10 , ARG A:12 , SER A:16 , GLN A:17 , SER A:18 , PRO A:96 , MET A:97 , TYR A:98 , ASN A:99 , PHE A:100 , SER A:145 , ARG A:146 , GLY A:147 , GLY A:148 , PHE A:151 , MRE A:1214 , HOH A:2042 , HOH A:2073 , VAL B:56 , PHE B:60	BINDING SITE FOR RESIDUE FMN A1213
2	AC2	SOFTWARE	FMN A:1213 , HOH A:2074 , VAL B:56 , TYR B:131 , PHE B:173	BINDING SITE FOR RESIDUE MRE A1214
3	AC3	SOFTWARE	PHE A:60 , SER B:10 , ARG B:12 , SER B:16 , GLN B:17 , SER B:18 , PRO B:96 , MET B:97 , TYR B:98 , ASN B:99 , PHE B:100 , SER B:145 , ARG B:146 , GLY B:147 , GLY B:148 , PHE B:151 , MRE B:1214 , HOH B:2060 , HOH B:2094	BINDING SITE FOR RESIDUE FMN B1213
4	AC4	SOFTWARE	PHE A:60 , TYR A:131 , PHE A:173 , GLY B:147 , FMN B:1213	BINDING SITE FOR RESIDUE MRE B1214
5	AC5	SOFTWARE	PRO B:47 , LEU B:48 , HOH B:2028	BINDING SITE FOR RESIDUE GOL B1215
6	AC6	SOFTWARE	PRO A:47 , LEU A:48 , SER A:104 , GLY A:105 , HOH A:2019 , HOH A:2075 , SER B:104 , GLY B:105	BINDING SITE FOR RESIDUE GOL A1215
7	AC7	SOFTWARE	VAL A:46 , PRO A:47 , LEU A:48 , PRO A:49 , LEU A:77 , HOH A:2038 , HOH A:2076	BINDING SITE FOR RESIDUE GOL A1216

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
 aligned with AZOR1_PSEAE | Q9I5F3 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:211
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 
          AZOR1_PSEAE     2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESGGRSFEDSCDEAEQRLLALARSA 212
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhh....eeeee.........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhh.....eeeee.--.eeeee.....eeeeeee...........hhhhh.hhhhhhhhhhhh...eeeeeee..------hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9c A   2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLD--VAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEG------SFEDSCDEAEQRLLALARSA 212
                                    11        21        31        41        51        61        71        81        91       101       111       121   |  |131       141       151       161       171       181    |    - |     201       211 
                                                                                                                                                     125  |                                                       186    193                   
                                                                                                                                                        128

Chain B from PDB  Type:PROTEIN  Length:193
 aligned with AZOR1_PSEAE | Q9I5F3 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:211
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 
          AZOR1_PSEAE     2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESGGRSFEDSCDEAEQRLLALARSA 212
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Flavodoxin_2-2v9cB01 B:2-209                                                                                                                                                                                    --- Pfam domains (1)
           Pfam domains (2) Flavodoxin_2-2v9cB02 B:2-209                                                                                                                                                                                    --- Pfam domains (2)
         Sec.struct. author .eeeeee.......hhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhh.....eee.------.eee.....eeeeeee...........hhhhh.hhhhhhhhhhhhh..eeeeeee..------------hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9c B   2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFV------QYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEG------------DEAEQRLLALARSA 212
                                    11        21        31        41        51        61        71        81        91       101       111       121 |     131       141       151       161       171       181    |    -       201       211 
                                                                                                                                                   123    130                                                     186          199

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Flavoprotein (71)

Family: Flavodoxin_2 (35)

Pseudomonas aeruginosa (2)

1a	Flavodoxin_2-2v9cB01	B:2-209
1b	Flavodoxin_2-2v9cB02	B:2-209

Gene Ontology (7, 7)

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	2v9c
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