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(-) Description

Title :  STRUCTURE OF THE RECEPTOR-BINDING PROTEIN OF BACTERIOPHAGE DET7: A PODOVIRAL TAILSPIKE IN A MYOVIRUS
 
Authors :  M. Walter, C. Fiedler, R. Grassl, M. Biebl, R. Rachel, X. L. Hermo-Parrado, A. L. Llamas-Saiz, R. Seckler, S. Miller, M. J. Van Raaij
Date :  05 Jul 07  (Deposition) - 19 Feb 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  O-Antigen Binding And Hydrolysis, Beta-Helix, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Walter, C. Fiedler, R. Grassl, M. Biebl, R. Rachel, X. L. Hermo-Parrado, A. L. Llamas-Saiz, R. Seckler, S. Miller, M. J. Van Raaij
Structure Of The Receptor-Binding Protein Of Bacteriophage Det7: A Podoviral Tail Spike In A Myovirus.
J. Virol. V. 82 2265 2008
PubMed-ID: 18077713  |  Reference-DOI: 10.1128/JVI.01641-07

(-) Compounds

Molecule 1 - SALMONELLA TYPHIMURIUM DB7155 BACTERIOPHAGE DET7 TAILSPIKE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: HMS174
    Expression System Taxid: 562
    Expression System Variant: DE3
    Fragment: O-ANTIGEN BINDING AND HYDROLYSIS DOMAIN AND C- TERMINAL INTERTWINED DOMAIN, RESIDUES 150-708
    Organism Scientific: BACTERIOPHAGE
    Organism Taxid: 38018
    Other Details: REGENSBURG SEWAGE, GERMANY
    Strain: DET7

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2UNK1Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2UNK-1Mod. Amino Acid

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:706 , HOH A:2826BINDING SITE FOR RESIDUE NA A1559

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(-) Sequences/Alignments

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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2v5iA00 A:156-708  [code=2.160.20.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..eee.hhh.hhhhhhhhh..eeee...................eeee...................eee..........ee............hhhhhhh..ee........hhhhhhhh.hhhhhhhhhhhh...............eee..eeeeeeeeee.....eeeeeeeeee...................eeeeeeeee.......................................ee..ee.......................................................................................................................................................................................eeeeee...........eeeeeee........eeeeeeeee..eeeeeeeee.hhhh..ee........hhhhh....eeeeeee..eeeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5i A 156 AAFRQEANKKFKYSVKLSDYSTLQDAVTDAVDGLLIDINYNFTDGESVDFxGKILTINCKAKFIGDGALIFNNMGPGSVINQPFMESKTTPWVIFPWDADGKWITDAALVAATLKQSKIEGYQPGVNDWVKFPGLEALLPQNVKDQHIAATLDIRSASRVEIRNAGGLMAAYLFRSCHHCKVIDSDSIIGGKDGIITFENLSGDWGLGNYVIGGRVHYGSGSGVQFLRNNGGESHNGGVIGVTSWRAGESGFKTYQGSVGGGTARNYNLQFRDSVALSPVWDGFDLGSDPGMAPEPDRPGDLPVSEYPFHQLPNNHLVDNILVMNSLGVGLGMDGSGGYVSNVTVQDCAGAGMLAHTYNRVFSNITVIDCNYLNFDSDQIIIIGDCIVNGIRAAGIKPQPSNGLVISAPNSTISGLVGNVPPDKILVGNLLDPVLGQSRVIGFNSDTAELALRINKLSATLDSGALRSHLNGYAGSGSAWTELTALSGSTPNAVSLKVNRGDYKTTEIPISGTVLPDEGVLDINTMSLYLDAGALWALIRLPDGSKTRMKLSV 708
                                   165       175       185       195       205|      215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705   
                                                                            206-UNK
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 Classification and Annotation

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Asymmetric Unit
(-)
Class: Mainly Beta (13760)

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