2V3L - JenaLib

Title :   ORIENTATIONAL AND DYNAMICAL HETEROGENEITY OF RHODAMINE 6G TERMINALLY ATTACHED TO A DNA HELIX

Authors :   H. Neubauer, N. Gaiko, S. Berger, J. Schaffer, C. Eggeling, J. Tuma, L. V C. A. M. Seidel, C. Griesinger, A. Volkmer

Date :   18 Jun 07 (Deposition) - 09 Oct 07 (Release) - 19 Apr 17 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (2x)
NMR Structure *: A,B  (1x)

Keywords :   Dna, Nucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Neubauer, N. Gaiko, S. Berger, J. Schaffer, C. Eggeling, J. Tuma, L. Verdier, C. A. Seidel, C. Griesinger, A. Volkmer
Orientational And Dynamical Heterogeneity Of Rhodamine 6G Terminally Attached To A Dna Helix Revealed By Nmr And Single-Molecule Fluorescence Spectroscopy.
J. Am. Chem. Soc. V. 129 12746 2007
PubMed-ID: 17900110 | Reference-DOI: 10.1021/JA0722574

Compounds

*Molecule 1 - 5'-D(GPAPAPTPGPGPCPGPAPAP TPGPGPCPGPCPTPTPTPG)-3'*
	Chains	:	A
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

*Molecule 2 - 5'-D(CPAPAPAPGPCPGPCPCPAP TPTPCPGPCPCPAPTPTPC)-3'*
	Chains	:	B
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:20
                                                   
                  2v3l A  1 GAATGGCGAATGGCGCTTTG 20
                                    10        20

Chain B from PDB  Type:DNA  Length:20
                                                   
                  2v3l B 22 CAAAGCGCCATTCGCCATTC 41
                                    31        41

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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