2V2U - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF MOUSE GAMMAC-CRYSTALLIN

Authors :   A. G. Purkiss, O. A. Bateman, K. Wyatt, L. L. David, G. J. Wistow, C. Sling

Date :   07 Jun 07 (Deposition) - 19 Jun 07 (Release) - 04 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Protein, Eye Lens Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. G. Purkiss, O. A. Bateman, K. Wyatt, L. L. David, G. J. Wistow, C. Slingsby
Evolutionary Adaptation Of Human And Mouse Eye Lens Gammac-Crystallins For Solubility And Stability: Fine-Tuning Of Molecular Dipoles.
J. Mol. Biol. V. 372 205 2007
PubMed-ID: 17659303 | Reference-DOI: 10.1016/J.JMB.2007.06.049

Molecule 1 - GAMMA CRYSTALLIN C
	Cell	:	FIBER
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYS
	Expression System Vector	:	PET3A
	Expression System Vector Type	:	PLASMID
	Organ	:	EYE
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	GAMMAC-CRYSTALLIN
	Tissue	:	LENS

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2V2U)

(no "Site" information available for 2V2U)

Asymmetric Unit

No.	Residues
1	A:18	-	A:22

Asymmetric Unit

No.	Residues
1	Gly B:1	-	Lys B:2

Asymmetric Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CRGC_MOUSE_001 *	S	11	G	CRGC_MOUSE	---	---	A/B	S	10	G
2	UniProt	VAR_CRGC_MOUSE_002 *	G	14	A	CRGC_MOUSE	---	---	A/B	G	13	A
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CRGC_MOUSE_001 *	S	11	G	CRGC_MOUSE	---	---	A	S	10	G
2	UniProt	VAR_CRGC_MOUSE_002 *	G	14	A	CRGC_MOUSE	---	---	A	G	13	A
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CRGC_MOUSE_001 *	S	11	G	CRGC_MOUSE	---	---	B	S	10	G
2	UniProt	VAR_CRGC_MOUSE_002 *	G	14	A	CRGC_MOUSE	---	---	B	G	13	A
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRGC_MOUSE	2-40 41-83 88-128 129-171	8	A:1-39 B:1-39 A:40-82 B:40-82 A:87-127 B:87-127 A:128-170 B:128-170

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRGC_MOUSE	2-40 41-83 88-128 129-171	4	A:1-39 - A:40-82 - A:87-127 - A:128-170 -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRGC_MOUSE	2-40 41-83 88-128 129-171	4	- B:1-39 - B:40-82 - B:87-127 - B:128-170

(no "Exon" information available for 2V2U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:173
 aligned with CRGC_MOUSE | Q61597 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:173
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   
           CRGC_MOUSE     2 GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY 174
               SCOP domains d2v2ua1 A:1-85 automated matches                                                     d2v2ua2 A:86-173 automated matches                                                       SCOP domains
               CATH domains 2v2uA01 A:1-83 Crystallins                                                         2v2uA02 A:84-173 Crystallins                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeee...............eeeeee.eeeeeee...eeeeeee..eee.hhhhhh.......eeeee......eeeeeeehhheeeeeee.....hhhhhh......eeeeee..eeeeee...eeeeeee..eee.hhhhh........eeee..... Sec.struct. author
                 SAPs(SNPs) ---------G--A---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CRYSTALLIN_BETA_GAMMA  PDB: A:1-39     CRYSTALLIN_BETA_GAMMA  PDB: A:40-82        ----CRYSTALLIN_BETA_GAMMA  PDB: A:87-127     CRYSTALLIN_BETA_GAMMA  PDB: A:128-170      --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v2u A   1 GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with CRGC_MOUSE | Q61597 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:173
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   
           CRGC_MOUSE     2 GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY 174
               SCOP domains d2v2ub1 B:1-85 automated matches                                                     d2v2ub2 B:86-173 automated matches                                                       SCOP domains
               CATH domains 2v2uB01 B:1-83 Crystallins                                                         2v2uB02 B:84-173 Crystallins                                                               CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------Crystall-2v2uB01 B:88-169                                                         ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------Crystall-2v2uB02 B:88-169                                                         ---- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------Crystall-2v2uB03 B:88-169                                                         ---- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------Crystall-2v2uB04 B:88-169                                                         ---- Pfam domains (4)
         Sec.struct. author ..eeee.hhhhh..eeee.....hhhhh.....eeee...eeeeeeehhheeeeeee..eee.hhhhhh.......eeeee......eeeeeee...eeeeeee.....hhhhhhh.....eeeeee..eeeeeehhheeeeeee...ee.hhhhhh.......eeee..... Sec.struct. author
                 SAPs(SNPs) ---------G--A---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CRYSTALLIN_BETA_GAMMA  PDB: B:1-39     CRYSTALLIN_BETA_GAMMA  PDB: B:40-82        ----CRYSTALLIN_BETA_GAMMA  PDB: B:87-127     CRYSTALLIN_BETA_GAMMA  PDB: B:128-170      --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v2u B   1 GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: gamma-Crystallin-like (65)

Superfamily: gamma-Crystallin-like (65)

Family: automated matches (25)

Protein domain: automated matches (25)

Mouse (Mus musculus) [TaxId: 10090] (2)

1a	d2v2ua1	A:1-85
1b	d2v2ua2	A:86-173
1c	d2v2ub1	B:1-85
1d	d2v2ub2	B:86-173

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Gamma-B Crystallin; domain 1 (45)

Homologous Superfamily: Crystallins (39)

Mouse (Mus musculus) (1)

1a	2v2uA02	A:84-173
1b	2v2uB02	B:84-173
1c	2v2uA01	A:1-83
1d	2v2uB01	B:1-83

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: gCrystallin (22)

Family: Crystall (21)

Mus musculus (Mouse) (3)

1a	Crystall-2v2uB01	B:88-169
1b	Crystall-2v2uB02	B:88-169
1c	Crystall-2v2uB03	B:88-169
1d	Crystall-2v2uB04	B:88-169

Asymmetric Unit(hide GO term definitions)

Chain A,B (CRGC_MOUSE | Q61597)

molecular function
	GO:0005212	structural constituent of eye lens	The action of a molecule that contributes to the structural integrity of the lens of an eye.
biological process
	GO:0043010	camera-type eye development	The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
	GO:0001654	eye development	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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