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(-) Description

Title :  MICROTUBULE BINDING DOMAIN OF DYNEIN-C
 
Authors :  Y. Kato, T. Yagi, S. Ohki, S. Burgess, S. Honda, R. Kamiya, M. Tanokura
Date :  04 Jun 10  (Deposition) - 08 Jun 11  (Release) - 09 Sep 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Dynein, Microtubule-Binding, Stalk Head, Mtbd, Antiparallel Coiled Coil, Motor Protein, Dsh (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. S. Kato, T. Yagi, S. A. Harris, S. Y. Ohki, K. Yura, Y. Shimizu, S. Honda, R. Kamiya, S. A. Burgess, M. Tanokura
Structure Of The Microtubule-Binding Domain Of Flagellar Dynein
Structure V. 22 1628 2014
PubMed-ID: 25450768  |  Reference-DOI: 10.1016/J.STR.2014.08.021

(-) Compounds

Molecule 1 - DYNEIN HEAVY CHAIN 9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-TEV
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2791-2942
    Gene: DHC9
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2RR7)

(-) Sites  (0, 0)

(no "Site" information available for 2RR7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RR7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RR7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RR7)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q4AC22_CHLRE | Q4AC22 from UniProtKB/TrEMBL  Length:4149

    Alignment length:155
                                  2797      2807      2817      2827      2837      2847      2857      2867      2877      2887      2897      2907      2917      2927      2937     
        Q4AC22_CHLRE   2788 ECEADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLMEFDFLDSLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVEPKRQKLREA 2942
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---MT-2rr7A01 A:4-155                                                                                                                                       Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........ee......ee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2rr7 A    1 GSQADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLMEFDFLDSLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVEPKRQKLREA  155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RR7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RR7)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: MT] (2)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (Q4AC22_CHLRE | Q4AC22)
molecular function
    GO:0045503    dynein light chain binding    Interacting selectively and non-covalently with a light chain of the dynein complex.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
biological process
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
cellular component
    GO:0030286    dynein complex    Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity.

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