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(-) Description

Title :  THE STRUCTURE OF RAT CYTOSOLIC PEPCK IN COMPLEX WITH PHOSPHONOFORMATE
 
Authors :  S. M. Sullivan, R. M. Stiffin, G. M. Carlson, T. Holyoak
Date :  16 Oct 07  (Deposition) - 29 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Gluconeogenesis, Lyase, Decarboxylase, Gtp-Binding, Nucleotide-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. M. Stiffin, S. M. Sullivan, G. M. Carlson, T. Holyoak
Differential Inhibition Of Cytosolic Pepck By Substrate Analogues. Kinetic And Structural Characterization Of Inhibitor Recognition.
Biochemistry V. 47 2099 2008
PubMed-ID: 18197707  |  Reference-DOI: 10.1021/BI7020662

(-) Compounds

Molecule 1 - PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC [GTP]
    ChainsA, B
    EC Number4.1.1.32
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPGEX4T2
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePCK1
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymPHOSPHOENOLPYRUVATE CARBOXYLASE, PEPCK-C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric Unit (5, 9)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2MN2Ligand/IonMANGANESE (II) ION
3NA2Ligand/IonSODIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PPF2Ligand/IonPHOSPHONOFORMIC ACID
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
3NA-1Ligand/IonSODIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PPF1Ligand/IonPHOSPHONOFORMIC ACID
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
3NA-1Ligand/IonSODIUM ION
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PPF1Ligand/IonPHOSPHONOFORMIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:244 , HIS A:264 , ASP A:311 , PPF A:3969 , HOH A:5803BINDING SITE FOR RESIDUE MN A 700
2AC2SOFTWAREVAL A:65 , LEU A:79 , ASN A:208 , HOH A:5839 , HOH A:5930 , HOH A:6047BINDING SITE FOR RESIDUE NA A 624
3AC3SOFTWARELYS B:244 , HIS B:264 , ASP B:311 , PPF B:3969 , HOH B:4040BINDING SITE FOR RESIDUE MN B 700
4AC4SOFTWARELEU B:79 , ASN B:208 , HOH B:3970 , HOH B:4138 , HOH B:4249BINDING SITE FOR RESIDUE NA B 624
5AC5SOFTWAREARG A:87 , LYS A:244 , HIS A:264 , SER A:286 , ASP A:311 , PHE A:333 , ARG A:405 , MN A:700 , HOH A:5786 , HOH A:5803 , HOH A:5924 , HOH A:5943 , HOH A:6055BINDING SITE FOR RESIDUE PPF A 3969
6AC6SOFTWAREARG B:87 , LYS B:244 , HIS B:264 , SER B:286 , ASP B:311 , ARG B:405 , MN B:700 , HOH B:4040 , HOH B:4161 , HOH B:4203 , HOH B:4257 , HOH B:4360BINDING SITE FOR RESIDUE PPF B 3969
7AC7SOFTWAREALA A:287 , GLY A:289 , ARG A:436 , HOH A:5914BINDING SITE FOR RESIDUE FMT A 3406
8AC8SOFTWAREASN A:7 , ASP A:10 , PHE A:11 , LYS A:14 , GLN A:39 , HOH A:6143BINDING SITE FOR RESIDUE PEG A 5759
9AC9SOFTWARETYR B:235 , GLY B:236 , GLY B:237 , ASN B:403 , ARG B:405 , HOH B:4257BINDING SITE FOR RESIDUE FMT B 3406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RK8)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Leu A:200 -Pro A:201
2Ser B:108 -Gly B:109
3Leu B:200 -Pro B:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RK8)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEPCK_GTPPS00505 Phosphoenolpyruvate carboxykinase (GTP) signature.PCKGC_RAT284-292
 
  2A:284-292
B:284-292
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEPCK_GTPPS00505 Phosphoenolpyruvate carboxykinase (GTP) signature.PCKGC_RAT284-292
 
  1A:284-292
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEPCK_GTPPS00505 Phosphoenolpyruvate carboxykinase (GTP) signature.PCKGC_RAT284-292
 
  1-
B:284-292

(-) Exons   (9, 18)

Asymmetric Unit (9, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000315861ENSRNOE00000330605chr3:164012410-164012511102PCKGC_RAT-00--
1.2ENSRNOT000000315862ENSRNOE00000271129chr3:164012684-164012948265PCKGC_RAT1-75752A:1-75
B:4-75
75
72
1.3ENSRNOT000000315863ENSRNOE00000271110chr3:164013321-164013502182PCKGC_RAT75-136622A:75-136
B:75-136
62
62
1.4ENSRNOT000000315864ENSRNOE00000271108chr3:164014063-164014266204PCKGC_RAT136-204692A:136-204
B:136-204
69
69
1.5ENSRNOT000000315865ENSRNOE00000271105chr3:164014535-164014722188PCKGC_RAT204-266632A:204-266
B:204-266
63
63
1.6ENSRNOT000000315866ENSRNOE00000271102chr3:164015301-164015463163PCKGC_RAT267-321552A:267-321
B:267-321
55
55
1.7ENSRNOT000000315867ENSRNOE00000271098chr3:164016073-164016297225PCKGC_RAT321-396762A:321-396
B:321-396
76
76
1.8ENSRNOT000000315868ENSRNOE00000271095chr3:164016388-164016519132PCKGC_RAT396-440452A:396-440
B:396-440
45
45
1.9ENSRNOT000000315869ENSRNOE00000271092chr3:164017053-16401714896PCKGC_RAT440-472332A:440-472
B:440-464
33
25
1.10ENSRNOT0000003158610ENSRNOE00000271120chr3:164017282-1640183451064PCKGC_RAT472-6221512A:472-622
B:473-622
151
150

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:622
 aligned with PCKGC_RAT | P07379 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:622
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620  
            PCKGC_RAT     1 MPPQLHNGLDFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM 622
               SCOP domains d2rk8a1 A:1-259 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                      d2rk8a2 A:260-622 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------2rk8A01 A:11-64,A:88-259                              2rk8A02                2rk8A01 A:11-64,A:88-259 Phosphoenolpyruvate Carboxykinase, domain 1                                                                                                        2rk8A03 A:260-329,A:415-622  [code=3.90.228.20, no name defined]      2rk8A02 A:65-87,A:330-414 Phosphoenolpyruvate Carboxykinase, domain 2                2rk8A03 A:260-329,A:415-622  [code=3.90.228.20, no name defined]                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eee......hhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh...eee.....eeee.........hhh.eeee..hhhhhh............eehhhhhhhhhhh.........eeeeeeeee........eeeeeee.hhhhhhhhhhhheehhhhhhhhh....eeeeee.................hhhhheeeee....eeeee...hhhhhh.......hhhhhhhhhhhh.eee..eeeeee.....eeeeeee.....hhhhhhh........eeeeee...eeeee.....eeee....eeeee........hhhhhhhh....eee..eee....ee.............ee.....ee.............eeeee.hhh............eeeeeeeee.........eee..hhhhhhhhhhhheee...........eee.hhhh......hhhhhhhhhhhhhhh......eeeee..............hhhhhhhhhhhhhhhhh....eeee..eeee.............hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEPCK_GTP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-75 UniProt: 1-75                                        ------------------------------------------------------------Exon 1.4  PDB: A:136-204 UniProt: 136-204                            --------------------------------------------------------------Exon 1.6  PDB: A:267-321 UniProt: 267-321              --------------------------------------------------------------------------Exon 1.8  PDB: A:396-440 UniProt: 396-440    -------------------------------Exon 1.10  PDB: A:472-622 UniProt: 472-622                                                                                                              Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------Exon 1.3  PDB: A:75-136 UniProt: 75-136                       -------------------------------------------------------------------Exon 1.5  PDB: A:204-266 UniProt: 204-266                      ------------------------------------------------------Exon 1.7  PDB: A:321-396 UniProt: 321-396                                   -------------------------------------------Exon 1.9  PDB: A:440-472         ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 2rk8 A   1 MPPQLHNGLDFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM 622
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620  

Chain B from PDB  Type:PROTEIN  Length:611
 aligned with PCKGC_RAT | P07379 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:619
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
            PCKGC_RAT     4 QLHNGLDFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM 622
               SCOP domains d2rk8b1 B:4-259 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                   d2rk8b2 B:260-622 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------2rk8B01 B:11-64,B:88-259                              2rk8B02                2rk8B01 B:11-64,B:88-259 Phosphoenolpyruvate Carboxykinase, domain 1                                                                                                        2rk8B03 B:260-329,B:415-622  [code=3.90.228.20, no name defined]      2rk8B02 B:65-87,B:330-414 Phosphoenolpyruvate Carboxykinase, domain 2                2rk8B03 B:260-329,B:415-622  [code=3.90.228.20, no         name defined]                                                                                                                                         CATH domains
           Pfam domains (1) -------------------------PEPCK-2rk8B01 B:29-622                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) -------------------------PEPCK-2rk8B02 B:29-622                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (2)
         Sec.struct. author .......hhh.eee.hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh...ee.......eee.........hhh.eeee..hhhhh.............eehhhhhhhhhhh.........eeeeeeeee........eeeeeee.hhhhhhhhhhhheehhhhhhhhh....eeeeee.................hhhhheeeeehhh.eeeee...hhhhhh.......hhhhhhhhhhhh.eee..eeeeee.....eeeeeee.....hhhhhhh........eeeeee...eeeee.....eeee....eeeee........hhhhhhhh....eee..eee....ee.............ee.....ee.............eeeee.hhh............eeeeeeeee.........eee..hhhhhhhhhhh.eee.--------..eee.hhhh......hhhhhhhhhhhhhhh......eeeee..............hhhhhhhhhhhhhhhhhh...eeee..eeee.............hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEPCK_GTP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:4-75 UniProt: 1-75 [INCOMPLETE]                        ------------------------------------------------------------Exon 1.4  PDB: B:136-204 UniProt: 136-204                            --------------------------------------------------------------Exon 1.6  PDB: B:267-321 UniProt: 267-321              --------------------------------------------------------------------------Exon 1.8  PDB: B:396-440 UniProt: 396-440    -------------------------------Exon 1.10  PDB: B:473-622 UniProt: 472-622 [INCOMPLETE]                                                                                                 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------Exon 1.3  PDB: B:75-136 UniProt: 75-136                       -------------------------------------------------------------------Exon 1.5  PDB: B:204-266 UniProt: 204-266                      ------------------------------------------------------Exon 1.7  PDB: B:321-396 UniProt: 321-396                                   -------------------------------------------Exon 1.9  PDB: B:440-464         ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 2rk8 B   4 QLHNGLDFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEA--------KVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM 622
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463|      473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      464      473                                                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit

(-) CATH Domains  (3, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (PCKGC_RAT | P07379)
molecular function
    GO:0019003    GDP binding    Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0031406    carboxylic acid binding    Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004550    nucleoside diphosphate kinase activity    Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004613    phosphoenolpyruvate carboxykinase (GTP) activity    Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2.
    GO:0004611    phosphoenolpyruvate carboxykinase activity    Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products.
    GO:0017076    purine nucleotide binding    Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0071320    cellular response to cAMP    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:0071332    cellular response to fructose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus.
    GO:0071377    cellular response to glucagon stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus.
    GO:0071456    cellular response to hypoxia    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0032869    cellular response to insulin stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0071347    cellular response to interleukin-1    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
    GO:0051365    cellular response to potassium ion starvation    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions.
    GO:0071300    cellular response to retinoic acid    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
    GO:0071356    cellular response to tumor necrosis factor    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
    GO:0017144    drug metabolic process    The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice.
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0046327    glycerol biosynthetic process from pyruvate    The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate.
    GO:0006475    internal protein amino acid acetylation    The addition of an acetyl group to a non-terminal amino acid in a protein.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0006165    nucleoside diphosphate phosphorylation    The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate.
    GO:0006107    oxaloacetate metabolic process    The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle.
    GO:0061402    positive regulation of transcription from RNA polymerase II promoter in response to acidic pH    Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.
    GO:0014823    response to activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
    GO:0032868    response to insulin    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0070741    response to interleukin-6    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-6 stimulus.
    GO:0033993    response to lipid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:1904640    response to methionine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methionine stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCKGC_RAT | P073792qew 2qey 2qf1 2qf2 2rk7 2rka 2rkd 2rke 3dt2 3dt4 3dt7 3dtb 3moe 3mof 3moh 4gmm 4gmu 4gmw 4gmz 4gnl 4gnm 4gno 4gnp 4gnq 4ox2 4yw8 4yw9 4ywb 4ywd 5fh0 5fh1 5fh2 5fh3 5fh4 5fh5 5v95 5v97 5v9f 5v9g 5v9h

(-) Related Entries Specified in the PDB File

2rk7 THE STRUCTURE OF RAT CYTOSOLIC PEPCK IN COMPLEX WITH OXALATE
2rka
2rkd
2rke