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(-) Description

Title :  CRYSTAL STRUCTURE OF TWIN-ARGININE TRANSLOCATION PATHWAY SIGNAL PROTEIN FROM BURKHOLDERIA PHYTOFIRMANS
 
Authors :  R. Agarwal, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  15 Oct 07  (Deposition) - 23 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Psi-2, Nysgxrc, Twin Arginine Translocation Pathway Signal Protein, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. K. Burley, S. Swaminathan
Crystal Structure Of Twin-Arginine Translocation Pathway Signal Protein From Burkholderia Phytofirmans.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TWIN-ARGININE TRANSLOCATION PATHWAY SIGNAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX4(BC)
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Gene: BPHYTDRAFT_4841
    Organism Scientific: BURKHOLDERIA PHYTOFIRMANS
    Organism Taxid: 398527
    Strain: PSJN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:48 , ASN A:52 , TYR A:55 , ASP A:105 , ASN A:131 , ASN A:183 , PRO A:185 , ARG A:189 , TRP A:213 , ASN A:240 , ASP A:266 , TRP A:286 , SO4 A:370BINDING SITE FOR RESIDUE GAL A 368
2AC2SOFTWAREGLU A:188 , TYR A:358 , ARG A:359 , HOH A:440BINDING SITE FOR RESIDUE SO4 A 369
3AC3SOFTWAREARG A:48 , SER A:49 , ASN A:52 , TYR A:55 , TRP A:213 , GAL A:368BINDING SITE FOR RESIDUE SO4 A 370
4AC4SOFTWAREASP A:207 , GLN A:209 , ARG A:228 , ARG A:252 , ALA A:257 , GLU A:279BINDING SITE FOR RESIDUE SO4 A 371
5AC5SOFTWAREASP A:287 , ARG A:337 , LYS A:342 , ARG A:351BINDING SITE FOR RESIDUE SO4 A 372

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RJO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:142 -Pro A:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RJO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RJO)

(-) Exons   (0, 0)

(no "Exon" information available for 2RJO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
 aligned with B2TEP5_PARPJ | B2TEP5 from UniProtKB/TrEMBL  Length:359

    Alignment length:322
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357  
         B2TEP5_PARPJ    38 AGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMALGAIEALRAEGLAGQIPVTGMDGTQPGLVAIKSGELVASVDWDPFWLGGIGLSMGLQAKEKKIDLATLPKDRRESFCTATFVTKTNVQDVIARAASPKAEWNNLYARVAGPVVYR 359
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rjoA01 A:38-152,A:288-321  [code=3.40.50.2300, no name defined]                                                   2rjoA02 A:153-287,A:322-359  [code=3.40.50.2300, no name defined]                                                                      2rjoA01 A:38-152,A:288-321        2rjoA02 A:153-287,A:322-359            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh.eeeee.......hhhhhh..eeeeee.hhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh.......ee....hhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhh.eeee..eee...hhhhhhhhh.............eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rjo A  38 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSmGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPImQAWmTRFNSKIKGVWAANDDmALGAIEALRAEGLAGQIPVTGmDGTQPGLVAIKSGELVASVDWDPFWLGGIGLSmGLQAKEKKIDLATLPKDRRESFCTATFVTKTNVQDVIARAASPKAEWNNLYARVAGPVVYR 359
                                    47        57        67        77        87        97       107       117       127       137       147       157       167|      177       187       197       207       217    |  227       237     | 247       257       267       277       287       297|      307       317       327       337       347       357  
                                                                                                                                                            168-MSE                                               222-MSE              243-MSE               265-MSE                          298-MSE                                                         
                                                                                                                                                                                                                      226-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RJO)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RJO)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2RJO)

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