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Title :   CRYSTAL STRUCTURE OF A PUTATIVE 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE (CJ1605C, DAPD) FROM CAMPYLOBACTER JEJUNI AT 1.90 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   11 Oct 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (6x)
Biol. Unit 2: A  (3x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative 2, 3, 4, 5-Tetrahydropyridine-2-Carboxylate N-Succinyltransferase (Np_282733. 1) From Campylobacter Jejuni At 1. 90 A Resolution
To Be Published
PubMed: search

Molecule 1 - PUTATIVE 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N- SUCCINYLTRANSFERASE
	Chains	:	A
	EC Number	:	2.3.1.117
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_282733.1, DAPD, CJ1605C
	Organism Scientific	:	CAMPYLOBACTER JEJUNI
	Organism Taxid	:	197

		1
Asymmetric Unit	:	A
Biological Unit 1 (6x)	:	A
Biological Unit 2 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	CL	2	Ligand/Ion	CHLORIDE ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 66)

No.	Name	Count	Type	Full Name
1	CIT	6	Ligand/Ion	CITRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	6	Ligand/Ion	GLYCEROL
4	MSE	54	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 33)

No.	Name	Count	Type	Full Name
1	CIT	3	Ligand/Ion	CITRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	3	Ligand/Ion	GLYCEROL
4	MSE	27	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:259 , HOH A:834	BINDING SITE FOR RESIDUE CL A 387
2	AC2	SOFTWARE	LYS A:345 , GLU A:346 , ILE A:347 , HOH A:557	BINDING SITE FOR RESIDUE CL A 388
3	AC3	SOFTWARE	ASN A:55 , SER A:58 , HIS A:105 , GLN A:106 , ASN A:107 , ILE A:108 , TYR A:340 , HOH A:522 , HOH A:692 , HOH A:808	BINDING SITE FOR RESIDUE CIT A 389
4	AC4	SOFTWARE	SER A:167 , ASN A:168 , ASP A:215 , HOH A:615	BINDING SITE FOR RESIDUE GOL A 390

(no "SS Bond" information available for 2RIJ)

(no "Cis Peptide Bond" information available for 2RIJ)

(no "SAP(SNP)/Variant" information available for 2RIJ)

(no "PROSITE Motif" information available for 2RIJ)

(no "Exon" information available for 2RIJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:381
 aligned with DAPD_CAMJE | Q0P823 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:381
                             1                                                                                                                                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379 
           DAPD_CAMJE     - -MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEEDGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLNGAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEELAKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVK 380
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------2rijA02 A:166-206                        2rijA03 A:207-380 Hexapeptide repeat proteins                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh........eeeeeeeee.......eeeeee...ee..hhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhh...........hhhhhh..eeee..eeehhhhhhhhhhhhhhh.......eee...hhhhh.......ee.hhhhh..........ee.....ee....ee....ee..ee....ee....ee....ee............ee....ee....ee........ee....ee....eeee.hhhhhhhhh........eee.hhhh....eeeee......eeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rij A   0 GmINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQASFALINYEQNFGSAAImLEAFmQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEEDGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLNGAFGLLSNVAWSDDKPIELEYLRANEmRLKmSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRmGASLAAGTTImPGASYVNFNAGTTGACmVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEELAKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAmIVALNKKAVK 380
                             |       9        19        29        39        49        59  |    |69        79        89        99       109       119       129       139       149       159       169       179       189 |     199       209       219       229       239       249     | 259       269       279       289       299       309       319       329       339       349       359       369|      379 
                             |                                                           62-MSE|                                                                                                                     187-MSE                                 227-MSE    238-MSE          255-MSE                                                                                                            370-MSE      
                             1-MSE                                                            67-MSE                                                                                                                     191-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2RIJ)

(no "Pfam Domain" information available for 2RIJ)

Asymmetric Unit(hide GO term definitions)

Chain A (DAPD_CAMJE | Q0P823)

molecular function
	GO:0008666	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity	Catalysis of the reaction: (S)-2,3,4,5-tetrahydrodipicolinate + H(2)O + succinyl-CoA = L-2-succinylamino-6-oxopimelate + CoA.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0019877	diaminopimelate biosynthetic process	The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
	GO:0009085	lysine biosynthetic process	The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid.
	GO:0009089	lysine biosynthetic process via diaminopimelate	The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2.3.1.117
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Description

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Ligands, Modified Residues, Ions (4, 13)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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