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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE KINASE (CAUR_3907) FROM CHLOROFLEXUS AURANTIACUS J-10-FL AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Oct 07  (Deposition) - 20 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  P-Loop Containing Nucleoside Triphosphate Hydrolases Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Kinase (Zp_00765535. 1) From Chloroflexus Aurantiacus J-10-Fl At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE KINASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ZP_00765535.1, CAURDRAFT_1197
    Organism Scientific: CHLOROFLEXUS AURANTIACUS
    Organism Taxid: 324602
    Strain: J-10-FL

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric Unit (4, 36)
No.NameCountTypeFull Name
1BEZ2Ligand/IonBENZOIC ACID
2CL4Ligand/IonCHLORIDE ION
3GOL3Ligand/IonGLYCEROL
4MSE27Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
2CL-1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 16)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4MSE13Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA D:14 , GLY D:16 , LYS D:17 , THR D:18 , ARG D:124 , HOH D:286 , HOH D:303BINDING SITE FOR RESIDUE CL D 193
2AC2SOFTWAREGLY B:16 , LYS B:17 , THR B:18 , ARG B:124 , HOH B:216 , HOH B:252BINDING SITE FOR RESIDUE CL B 193
3AC3SOFTWAREGLY A:16 , LYS A:17 , THR A:18 , ARG A:124 , HOH A:196 , HOH A:221BINDING SITE FOR RESIDUE CL A 193
4AC4SOFTWAREGLY C:16 , LYS C:17 , THR C:18 , ARG C:124 , HOH C:264BINDING SITE FOR RESIDUE CL C 193
5AC5SOFTWAREALA D:14 , ARG D:124 , ARG D:130 , ASP D:136 , HOH D:286 , HOH D:295 , HOH D:353BINDING SITE FOR RESIDUE BEZ D 194
6AC6SOFTWAREPRO B:13 , ALA B:14 , ILE B:121 , ARG B:124 , ARG B:130 , ASP B:136 , HOH B:216BINDING SITE FOR RESIDUE BEZ B 194
7AC7SOFTWAREPRO B:154 , LEU B:155 , LEU B:157 , GLY B:158 , GLY B:159BINDING SITE FOR RESIDUE GOL B 195
8AC8SOFTWAREVAL B:87 , ASP B:88 , PRO B:153 , HOH B:221 , GLU D:92 , GLN D:95BINDING SITE FOR RESIDUE GOL D 195
9AC9SOFTWAREGLY D:47 , TRP D:48 , ILE D:172 , ASP D:173 , HOH D:317 , HOH D:333 , HOH D:345 , HOH D:359BINDING SITE FOR RESIDUE GOL D 196

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RHM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RHM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RHM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RHM)

(-) Exons   (0, 0)

(no "Exon" information available for 2RHM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with A9WDG5_CHLAA | A9WDG5 from UniProtKB/TrEMBL  Length:192

    Alignment length:190
                             1                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189
         A9WDG5_CHLAA     - -MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQSGT 189
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rhmA00 A:0-189 P-loop containing nucleotide triphosphate hydrolases                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh..--------.hhhhhhhhhhh...........eeeee..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhm A   0 GmQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVmFDGLGWSDREWSRRVGATAImmLYHTAATILQSGQSLImESNFRVDLDTERmQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGA--------RSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDmNAIVQWVRQHLQSGT 189
                             |       9        19        29        39  |     49        59   ||   69        79 |      89    |   99       109       119       129       139       149       159       169    |  179       189
                             |                                       42-MSE               63-MSE            81-MSE       94-MSE                            129      138                                 174-MSE           
                             1-MSE                                                         64-MSE                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:188
 aligned with A9WDG5_CHLAA | A9WDG5 from UniProtKB/TrEMBL  Length:192

    Alignment length:188
                             1                                                                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179        
         A9WDG5_CHLAA     - -MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 187
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rhmB00 B:0-187 P-loop containing nucleotide triphosphate hydrolases                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhh...........eeeee..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhm B   0 GmQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVmFDGLGWSDREWSRRVGATAImmLYHTAATILQSGQSLImESNFRVDLDTERmQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDmNAIVQWVRQHLQS 187
                             |       9        19        29        39  |     49        59   ||   69        79 |      89    |   99       109       119       129       139       149       159       169    |  179        
                             1-MSE                                   42-MSE               63-MSE            81-MSE       94-MSE                                                                         174-MSE         
                                                                                           64-MSE                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:190
 aligned with A9WDG5_CHLAA | A9WDG5 from UniProtKB/TrEMBL  Length:192

    Alignment length:190
                             1                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189
         A9WDG5_CHLAA     - -MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQSGT 189
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rhmC00 C:0-189 P-loop containing nucleotide triphosphate hydrolases                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhh...........eeeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhm C   0 GmQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVmFDGLGWSDREWSRRVGATAImmLYHTAATILQSGQSLImESNFRVDLDTERmQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDmNAIVQWVRQHLQSGT 189
                             |       9        19        29        39  |     49        59   ||   69        79 |      89    |   99       109       119       129       139       149       159       169    |  179       189
                             1-MSE                                   42-MSE               63-MSE            81-MSE       94-MSE                                                                         174-MSE           
                                                                                           64-MSE                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:185
 aligned with A9WDG5_CHLAA | A9WDG5 from UniProtKB/TrEMBL  Length:192

    Alignment length:185
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181     
         A9WDG5_CHLAA     2 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQ 186
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rhmD00 D:2-186 P-loop containing nucleotide triphosphate hydrolases                                                                                                                      CATH domains
           Pfam domains (1) ----AAA_33-2rhmD01 D:6-149                                                                                                                          ------------------------------------- Pfam domains (1)
           Pfam domains (2) ----AAA_33-2rhmD02 D:6-149                                                                                                                          ------------------------------------- Pfam domains (2)
           Pfam domains (3) ----AAA_33-2rhmD03 D:6-149                                                                                                                          ------------------------------------- Pfam domains (3)
           Pfam domains (4) ----AAA_33-2rhmD04 D:6-149                                                                                                                          ------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhh...........eeeee..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhm D   2 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVmFDGLGWSDREWSRRVGATAImmLYHTAATILQSGQSLImESNFRVDLDTERmQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDmNAIVQWVRQHLQ 186
                                    11        21        31        41|       51        61 ||     71        81        91  |    101       111       121       131       141       151       161       171  |    181     
                                                                   42-MSE               63-MSE            81-MSE       94-MSE                                                                         174-MSE        
                                                                                         64-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RHM)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2RHM)

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