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(-) Description

Authors :  R. Agarwal, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  05 Oct 07  (Deposition) - 23 Oct 07  (Release) - 13 Jul 11  (Revision)
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  11011J, Nysgxrc, Transctiptional Regulator, Laci Family, Sugar Binding Protein, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Dna-Binding, Transcription, Transcription Regulation, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  R. Agarwal, S. K. Burley, S. Swaminathan
Structural Analysis Of Transcription Regulator Of Laci Family From Burkholderia Phymatum.
To Be Published
PubMed: search

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPSGX3(BC)
    Expression System StrainBL21(DE3)RIL
    Expression System Taxid562
    Expression System VectorPET
    Expression System Vector TypePLASMID
    FragmentRESIDUES 81-359
    Organism ScientificBURKHOLDERIA PHYMATUM
    Organism Taxid391038

 Structural Features

(-) Chains, Units

Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name

(-) Sites  (0, 0)

(no "Site" information available for 2RGY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RGY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
1Val A:292 -Pro A:293
2Ala A:311 -Pro A:312

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:275
 aligned with B2JNW3_PARP8 | B2JNW3 from UniProtKB/TrEMBL  Length:334

    Alignment length:275
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328     
               SCOP domains d2rgya_ A: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2rgyA01 A:85-187,A:319-339  [code=, no name defined]                                       2rgyA02 A:188-318,A:349-352  [code=, no name defined]                                                                  2rgyA01              ---------2rgy------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                    94       104       114       124       134       144       154       164 |   | 174       184       194       204       214       224       234       244       254       264       274  |    284       294       304       314       324       334       344       354     
                                                                                                           166-MSE                                                                                                        277-MSE                                                                     353-MSE  

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RGY)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (B2JNW3_PARP8 | B2JNW3)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008784    alanine racemase activity    Catalysis of the reaction: L-alanine = D-alanine.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.


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