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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RNA POLYMERASE I SUBCOMPLEX A14/43
 
Authors :  S. R. Geiger, C. D. Kuhn, P. Cramer
Date :  28 Sep 07  (Deposition) - 15 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Transferase Dna/Rna, Dna-Binding, Phosphorylation, Rna Polymerase I, Pol I, Poli, Rpoli, Nuclear Protein, Nucleolar Protein, Transcription, Transferase, Ddrp, Rpb4/7, Ribosome Biogenesis, Dna-Directed Rna Polymerase, Nucleus (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. D. Kuhn, S. R. Geiger, S. Baumli, M. Gartmann, J. Gerber, S. Jennebach, T. Mielke, H. Tschochner, R. Beckmann, P. Cramer
Functional Architecture Of Rna Polymerase I.
Cell(Cambridge, Mass. ) V. 131 1260 2007
PubMed-ID: 18160037  |  Reference-DOI: 10.1016/J.CELL.2007.10.051
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA4
    ChainsA, C, E
    EC Number2.7.7.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21 DE3 RIL
    Expression System Vector TypePET28
    GeneRPA43, RRN12
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    SynonymDNA-DIRECTED DNA-DEPENDENT RNA POLYMERASE 36 KDA POLYPEPTIDE, A43
 
Molecule 2 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA4
    ChainsB, D, F
    EC Number2.7.7.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21 DE3 RIL
    Expression System Vector TypePET28
    GeneRPA43, RRN12
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    SynonymDNA-DIRECTED RNA POLYMERASE I 14 KDA POLYPEPTIDE, A14

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2RF4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RF4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro D:100 -Pro D:101
2Pro F:100 -Pro F:101

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RF4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RF4)

(-) Exons   (2, 6)

Asymmetric Unit (2, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YDR156W1YDR156W.1IV:769523-769936414RPA14_YEAST1-1371373B:16-101 (gaps)
D:17-101 (gaps)
F:17-101 (gaps)
86
85
85

2.1YOR340C1YOR340C.1XV:960179-959199981RPA43_YEAST1-3263263A:22-250 (gaps)
C:21-250 (gaps)
E:21-250 (gaps)
229
230
230

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with RPA43_YEAST | P46669 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:229
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
          RPA43_YEAST    22 KQVTNPIDEKNGTSNCIVRVPIALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDVEEDADVINTDENNGNNNNEDNKDSNGGSNSLGKFSFGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhh..ee....eeeeeeeeee......-----------------...eeeeeeeeeee......eeeeee.......eeeeehhheeeee...............-------------------------------------..-...............eeeeeeeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: A:22-250 (gaps) UniProt: 1-326 [INCOMPLETE]                                                                                                                                                                            Transcript 2
                 2rf4 A  22 KQVTNPIDEKNGTSNCIVRVPIALYVSLAPmYLENPLQGVmKQHLNPLVmKYNNKVGGVVLGYEGLKILDADP-----------------PFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHND-------------------------------------GN-SLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
                                    31        41        51|       61|       71        81        91  |      -         -|      121       131       141       151       161       171|        -         -         -       211 |     221       231       241         
                                                         52-MSE    62-MSE   71-MSE                 94               112                                                         172                                   210| |                                     
                                                                                                                                                                                                                       211 |                                     
                                                                                                                                                                                                                         213                                     

Chain B from PDB  Type:PROTEIN  Length:61
 aligned with RPA14_YEAST | P50106 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:86
                                    25        35        45        55        65        75        85        95      
          RPA14_YEAST    16 LNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAADADAAAVANTSLNIDTNLSSSISQLKRIQRDFKGLPP 101
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....ee.hhhhhhhhhhhhhhhhhh...-------------------------...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:16-101 (gaps) UniProt: 1-137 [INCOMPLETE]                             Transcript 1
                 2rf4 B  16 LNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIID-------------------------IDTNLSSSISQLKRIQRDFKGLPP 101
                                    25        35        45      |  -         -         -  |     85        95      
                                                               52                        78                       

Chain C from PDB  Type:PROTEIN  Length:172
 aligned with RPA43_YEAST | P46669 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:230
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
          RPA43_YEAST    21 KKQVTNPIDEKNGTSNCIVRVPIALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDVEEDADVINTDENNGNNNNEDNKDSNGGSNSLGKFSFGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeeeeee..hhhhh..hhhhhh..hhhhhh..ee....eeeeeeeeeehhhh..-------------------..eeeeeeeeee......eeeeee.......eeeeehhheeeee.hhhh..........-------------------------------------.--...............eeeeeeeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: C:21-250 (gaps) UniProt: 1-326 [INCOMPLETE]                                                                                                                                                                             Transcript 2
                 2rf4 C  21 KKQVTNPIDEKNGTSNCIVRVPIALYVSLAPmYLENPLQGVmKQHLNPLVmKYNNKVGGVVLGYEGLKILDADP-------------------GFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHND-------------------------------------G--SLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
                                    30        40        50 |      60 |      70|       80        90   |     -         -   |   120       130       140       150       160       170 |       -         -         -       210  |    220       230       240       250
                                                          52-MSE    62-MSE   71-MSE                 94                 114                                                       172                                   210  |                                     
                                                                                                                                                                                                                          213                                     

Chain D from PDB  Type:PROTEIN  Length:60
 aligned with RPA14_YEAST | P50106 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:85
                                    26        36        46        56        66        76        86        96     
          RPA14_YEAST    17 NTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAADADAAAVANTSLNIDTNLSSSISQLKRIQRDFKGLPP 101
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....ee.hhhhhhhhhhhhhhhhhh...-------------------------...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: D:17-101 (gaps) UniProt: 1-137 [INCOMPLETE]                            Transcript 1
                 2rf4 D  17 NTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIID-------------------------IDTNLSSSISQLKRIQRDFKGLPP 101
                                    26        36        46     |   -         -         - |      86        96     
                                                              52                        78                       

Chain E from PDB  Type:PROTEIN  Length:175
 aligned with RPA43_YEAST | P46669 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:230
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
          RPA43_YEAST    21 KKQVTNPIDEKNGTSNCIVRVPIALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDVEEDADVINTDENNGNNNNEDNKDSNGGSNSLGKFSFGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------SHS2_Rpb7-N-2rf4E01 E:44-125                                                      -----------------------------------------------                                     ----------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------SHS2_Rpb7-N-2rf4E02 E:44-125                                                      -----------------------------------------------                                     ----------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------SHS2_Rpb7-N-2rf4E03 E:44-125                                                      -----------------------------------------------                                     ----------------------------------------- Pfam domains (3)
         Sec.struct. author .......ee....ee..eeeeeeeeee..hhhhh..hhhhhhhhhhhhhh..ee....eeeeeeeeee.......------------------..eeeeeeeeee......eeeeeeeee....eeeeehhheeeee............ee.-------------------------------------.eeeee............eeeeeeeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: E:21-250 (gaps) UniProt: 1-326 [INCOMPLETE]                                                                                                                                                                             Transcript 2
                 2rf4 E  21 KKQVTNPIDEKNGTSNCIVRVPIALYVSLAPmYLENPLQGVmKQHLNPLVmKYNNKVGGVVLGYEGLKILDADPL------------------GFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHND-------------------------------------GNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLI 250
                                    30        40        50 |      60 |      70|       80        90    |    -         -   |   120       130       140       150       160       170 |       -         -         -       210       220       230       240       250
                                                          52-MSE    62-MSE   71-MSE                  95                114                                                       172                                   210                                        

Chain F from PDB  Type:PROTEIN  Length:60
 aligned with RPA14_YEAST | P50106 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:85
                                    26        36        46        56        66        76        86        96     
          RPA14_YEAST    17 NTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAADADAAAVANTSLNIDTNLSSSISQLKRIQRDFKGLPP 101
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -RNA_polI_A14-2rf4F01 F:18-101                                                        Pfam domains (1)
           Pfam domains (2) -RNA_polI_A14-2rf4F02 F:18-101                                                        Pfam domains (2)
           Pfam domains (3) -RNA_polI_A14-2rf4F03 F:18-101                                                        Pfam domains (3)
         Sec.struct. author ....eeee....ee.hhhhhhhhhhhhhhhhhh...-------------------------...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:17-101 (gaps) UniProt: 1-137 [INCOMPLETE]                            Transcript 1
                 2rf4 F  17 NTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIID-------------------------IDTNLSSSISQLKRIQRDFKGLPP 101
                                    26        36        46     |   -         -         - |      86        96     
                                                              52                        78                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RF4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RF4)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: SHS2 (26)

(-) Gene Ontology  (10, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E   (RPA43_YEAST | P46669)
molecular function
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0006360    transcription from RNA polymerase I promoter    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0042790    transcription of nuclear large rRNA transcript from RNA polymerase I promoter    The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005736    DNA-directed RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F   (RPA14_YEAST | P50106)
molecular function
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0006360    transcription from RNA polymerase I promoter    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0042790    transcription of nuclear large rRNA transcript from RNA polymerase I promoter    The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
cellular component
    GO:0005736    DNA-directed RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPA14_YEAST | P501064c2m 4c3h 4c3i 4c3j 4ym7 5g5l 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61
        RPA43_YEAST | P466694c2m 4c3h 4c3i 4c3j 4ym7 5g5l 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61

(-) Related Entries Specified in the PDB File

1y14 CRYSTAL STRUCTURE OF YEAST RPB4/7
2ckz X-RAY STRUCTURE OF RNA POLYMERASE III SUBCOMPLEX C17/25