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(-) Description

Title :  CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FROM ROSEOVARIUS NUBINHIBENS ISM
 
Authors :  Y. Patskovsky, J. Bonanno, J. M. Sauder, S. Ozyurt, M. Gilmore, C. Lau, M T. Gheyi, S. R. Wasserman, J. Koss, J. A. Gerlt, S. K. Burley, S. C. Almo, Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  25 Sep 07  (Deposition) - 09 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Enolase, Racemase, Structural Genomics, Psi, Protein Structure Initiative, Nysgrc, New York Structural Genomics Research Consortium, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, J. B. Bonanno, J. M. Sauder, M. Gilmore, S. Ozyurt, C. Lau, M. Maletic, T. Gheyi, S. R. Wasserman, J. Koss, J. A. Gerlt, S. K. Burley, S. C. Almo
Crystal Structure Of Mandelate Racemase/Muconate Lactonizin Enzyme From Roseovarius Nubinhibens Ism.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME, PUTATIVE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Gene: ISM_14070
    Organism Scientific: ROSEOVARIUS NUBINHIBENS
    Organism Taxid: 89187
    Strain: ISM

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MG8Ligand/IonMAGNESIUM ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:193 , GLU A:218 , ASP A:241 , HOH A:388 , HOH A:492 , HOH A:506BINDING SITE FOR RESIDUE MG A 378
02AC2SOFTWAREASP B:193 , GLU B:218 , ASP B:241 , HOH B:380 , HOH B:471 , HOH B:492BINDING SITE FOR RESIDUE MG B 378
03AC3SOFTWAREASP C:193 , GLU C:218 , ASP C:241 , HOH C:411 , HOH C:504 , HOH C:520BINDING SITE FOR RESIDUE MG C 378
04AC4SOFTWAREASP D:193 , GLU D:218 , ASP D:241 , HOH D:383 , HOH D:489 , HOH D:506BINDING SITE FOR RESIDUE MG D 378
05AC5SOFTWARETYR E:57 , ASP E:193 , GLU E:218 , ASP E:241 , HOH E:383 , HOH E:462 , HOH E:476BINDING SITE FOR RESIDUE MG E 378
06AC6SOFTWAREASP F:193 , GLU F:218 , ASP F:241 , HOH F:382 , HOH F:467 , HOH F:468BINDING SITE FOR RESIDUE MG F 378
07AC7SOFTWAREASP G:193 , GLU G:218 , ASP G:241 , HOH G:420 , HOH G:492 , HOH G:517BINDING SITE FOR RESIDUE MG G 378
08AC8SOFTWAREASP H:193 , GLU H:218 , ASP H:241 , HOH H:384 , HOH H:411 , HOH H:494BINDING SITE FOR RESIDUE MG H 378
09AC9SOFTWAREALA A:168 , ASP A:169 , TRP A:170 , GLY A:197 , TRP A:198 , ARG A:199 , ASN A:202BINDING SITE FOR RESIDUE GOL A 379
10BC1SOFTWAREASP A:111 , GLN A:115 , THR A:347 , PRO A:348 , LEU A:350 , GLY A:351 , VAL A:352 , THR A:353BINDING SITE FOR RESIDUE GOL A 380
11BC2SOFTWARETHR C:245 , GLY C:246 , HIS C:248 , MET C:249BINDING SITE FOR RESIDUE GOL C 379
12BC3SOFTWAREGLY D:167 , ALA D:168 , ASP D:169 , TRP D:170 , GLY D:197 , TRP D:198 , ARG D:199 , ASN D:202BINDING SITE FOR RESIDUE GOL D 379
13BC4SOFTWAREALA F:24 , GLY F:167 , ALA F:168 , ASP F:169 , TRP F:170 , GLY F:197 , ARG F:199 , ASN F:202BINDING SITE FOR RESIDUE GOL F 379
14BC5SOFTWAREGLY G:167 , ALA G:168 , ASP G:169 , TRP G:170 , GLY G:197 , TRP G:198 , ARG G:199 , ASN G:202BINDING SITE FOR RESIDUE GOL G 379
15BC6SOFTWAREALA H:24 , GLY H:167 , ALA H:168 , ASP H:169 , TRP H:170 , GLY H:197 , TRP H:198 , ARG H:199 , ASN H:202BINDING SITE FOR RESIDUE GOL H 379

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RDX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala F:139 -Pro F:140
2Ala G:139 -Pro G:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RDX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RDX)

(-) Exons   (0, 0)

(no "Exon" information available for 2RDX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxa1 A:0-127 automated matches                                                                                               d2rdxa2 A:128-368 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxA01 A:0-118,A:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxA01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee......ee...ee..eeeeeeeeeee....eeeeee............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee.....hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.....eeee.hhhhhh....eee..eee..eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx A   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         


Chain B from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxb1 B:0-127 automated matches                                                                                               d2rdxb2 B:128-368 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxB01 B:0-118,B:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxB01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee......ee...ee..eeeeeeeeeee.....eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee.eeee.......hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.....eee..hhhhhh....eee..ee...eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx B   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         


Chain C from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxc1 C:0-127 automated matches                                                                                               d2rdxc2 C:128-368 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxC01 C:0-118,C:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxC01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.....eee...eee.eeeeeeeeeee....eeeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee........hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh..........hhhhhh....eee..eee..eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx C   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         


Chain D from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxd1 D:0-127 automated matches                                                                                               d2rdxd2 D:128-368 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxD01 D:0-118,D:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxD01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.....eee...eee.eeeeeeeeeee....eeeeee............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.....eee..hhhhhh....eee..eee..eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx D   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         


Chain E from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:372
                             1                                                                                                                                                                                                                                                                                                                                                                             369  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369  
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWALP--   -
               SCOP domains d2rdxe1 E:0-127 automated matches                                                                                               d2rdxe2 E:128-   371 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxE01 E:0-118,E:356-371 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxE01          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeeee......ee...ee..eeeeeeeeeee....eeeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee.eeee..---..hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.....eee..hhhhhh....eee..eee..eee........eeehhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2rdx E   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQ---AETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWALPEG 371
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139 |   | 149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369  
                                                                                                                                                                       141 145                                                                                                                                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxf1 F:0-127 automated matches                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rdxF01 F:0-118,F:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxF01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.....eee...eee.eeeeeeeeeee....eeeeee............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh..........hhhhhh....eee..eee..eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx F   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         


Chain G from PDB  Type:PROTEIN  Length:360
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:370
                             1                                                                                                                                                                                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWALP 369
               SCOP domains d2rdxg1 G:0-127 aut          omated matches                                                                                     d2rdxg2 G:128-369 automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains 2rdxG01 G:0-118,G:3          56-369 Enolase-like, N-terminal domain                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxG01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee....----------.eeeeeeeeeee....eeeeee............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee.eee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.hhhhh....hhhhhh....eee..eee..eee........eeehhhhhh...eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx G   0 SLRITRIRLYKTDLPYVDG----------TVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWALP 369
                                     9        |-        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
                                             18         29                                                                                                                                                                                                                                                                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:369
 aligned with A3SNF8_ROSNI | A3SNF8 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                             1                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359         
         A3SNF8_ROSNI     - -MRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
               SCOP domains d2rdxh1 H:0-127 automated matches                                                                                               d2rdxh2 H:128-368 automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains 2rdxH01 H:0-118,H:356-368 Enolase-like, N-terminal domain                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2rdxH01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.....eee...eee.eeeeeeeeeee....eeeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee.eeee......hhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhh.....eee....hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh..........hhhhhh....eee..eee..eee........eeehhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rdx H   0 SLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDYILEQPCRSYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADWAL 368
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 15)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Enolase-like; domain 1 (252)
(-)
Homologous Superfamily: Enolase-like, N-terminal domain (130)
(-)
Roseovarius nubinhibens ism. Organism_taxid: 89187. Strain: ism. (1)
1a2rdxA01A:0-118,A:356-368
1b2rdxB01B:0-118,B:356-368
1c2rdxC01C:0-118,C:356-368
1d2rdxD01D:0-118,D:356-368
1e2rdxF01F:0-118,F:356-368
1f2rdxH01H:0-118,H:356-368
1g2rdxG01G:0-118,G:356-369
1h2rdxE01E:0-118,E:356-371

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RDX)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (A3SNF8_ROSNI | A3SNF8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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