2RCY - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PYRROLINE CARBOXYLATE REDUCTASE (MAL13P1.284) WITH NADP BOUND

Authors :   A. K. Wernimont, J. Lew, Y. H. Lin, H. Ren, X. Sun, C. Khuu, A. Hassanali, G Y. Zhao, I. Kozieradzki, M. Schapira, A. Bochkarev, J. Weigelt, M. Sun C. H. Arrowsmith, A. M. Edwards, R. Hui, J. D. Artz, M. Amani, Structura Genomics Consortium (Sgc)

Date :   20 Sep 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E  (2x)

Keywords :   Malaria, Structural Genomics, Pyrroline Reductase, Oxidoreductase, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Wernimont, J. Lew, Y. H. Lin, H. Ren, X. Sun, C. Khuu, A. Hassanali, Y. Zhao, I. Kozieradzki, M. Schapira, A. Bochkarev, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, R. Hui, J. D. Artz, M. Amani
Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13P1. 284) With Nadp Bound.
To Be Published
PubMed: search

Molecule 1 - PYRROLINE CARBOXYLATE REDUCTASE
	Chains	:	A, B, C, D, E
	EC Number	:	1.5.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15-TEV-LIC
	Expression System Strain	:	DH5A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	MAL13P1.284
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329
	Strain	:	3D7

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (2x)	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 58)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MSE	47	Mod. Amino Acid	SELENOMETHIONINE
4	NAP	5	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 1 (3, 108)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	94	Mod. Amino Acid	SELENOMETHIONINE
4	NAP	10	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:203 , VAL A:206 , LYS E:203	BINDING SITE FOR RESIDUE MG A 263
2	AC2	SOFTWARE	LYS B:203 , LYS C:203	BINDING SITE FOR RESIDUE MG B 263
3	AC3	SOFTWARE	GLY B:11 , GLY B:13 , GLN B:14 , MSE B:15 , TYR B:37 , PRO B:39 , SER B:40 , LYS B:42 , ASN B:52 , ALA B:65 , VAL B:66 , PRO B:68 , ILE B:70 , VAL B:74 , ILE B:90 , CYS B:91 , GLY B:92 , MSE B:113 , THR B:116 , HOH B:285 , HOH B:289 , HOH B:316 , HOH B:317 , HOH B:331 , ASN C:222 , ILE C:223 , SER C:225	BINDING SITE FOR RESIDUE NAP B 264
4	AC4	SOFTWARE	GLY A:11 , GLY A:13 , GLN A:14 , MSE A:15 , PRO A:39 , SER A:40 , LYS A:42 , ASN A:52 , ALA A:65 , VAL A:66 , LYS A:67 , PRO A:68 , ILE A:70 , VAL A:74 , ILE A:90 , CYS A:91 , GLY A:92 , MSE A:113 , PRO A:114 , THR A:116 , HOH A:298 , HOH A:313 , HOH A:316 , HOH A:321 , ASN E:222 , ILE E:223 , SER E:225	BINDING SITE FOR RESIDUE NAP A 264
5	AC5	SOFTWARE	GLY D:13 , GLN D:14 , MSE D:15 , PRO D:39 , SER D:40 , LYS D:42 , ASN D:52 , ALA D:65 , VAL D:66 , LYS D:67 , PRO D:68 , ILE D:70 , ILE D:90 , CYS D:91 , GLY D:92 , MSE D:113 , PRO D:114 , THR D:116 , ASN D:222 , ILE D:223 , SER D:225 , HOH D:277 , HOH D:285 , HOH D:289 , HOH D:304 , HOH D:308	BINDING SITE FOR RESIDUE NAP D 264
6	AC6	SOFTWARE	ASN A:222 , ILE A:223 , SER A:225 , GLY E:11 , GLY E:13 , GLN E:14 , MSE E:15 , PRO E:39 , SER E:40 , LYS E:42 , ASN E:52 , ALA E:65 , VAL E:66 , LYS E:67 , PRO E:68 , ILE E:70 , ILE E:90 , CYS E:91 , GLY E:92 , MSE E:113 , PRO E:114 , THR E:116 , HOH E:286 , HOH E:297 , HOH E:299 , HOH E:306 , HOH E:308 , HOH E:335 , HOH E:337	BINDING SITE FOR RESIDUE NAP E 264
7	AC7	SOFTWARE	ASN B:222 , ILE B:223 , SER B:225 , GLY C:11 , GLY C:13 , GLN C:14 , MSE C:15 , PRO C:39 , ASN C:52 , ALA C:65 , VAL C:66 , PRO C:68 , ILE C:70 , VAL C:74 , ILE C:90 , CYS C:91 , GLY C:92 , MSE C:113 , PRO C:114 , THR C:116 , HOH C:270 , HOH C:301 , HOH C:306 , HOH C:309 , HOH C:335 , HOH C:341 , HOH C:345 , HOH C:346	BINDING SITE FOR RESIDUE NAP C 264
8	AC8	SOFTWARE	MSE A:208 , GLN A:214 , LEU A:219 , ASN A:222 , HOH A:275 , GLN E:14 , THR E:116	BINDING SITE FOR RESIDUE GOL A 265
9	AC9	SOFTWARE	ASN B:4 , ILE B:28 , TYR B:140 , ASP B:143 , ILE B:144	BINDING SITE FOR RESIDUE GOL B 265

(no "SS Bond" information available for 2RCY)

(no "Cis Peptide Bond" information available for 2RCY)

(no "SAP(SNP)/Variant" information available for 2RCY)

(no "PROSITE Motif" information available for 2RCY)

(no "Exon" information available for 2RCY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q8IDC6_PLAF7 | Q8IDC6 from UniProtKB/TrEMBL  Length:262

    Alignment length:262
                             1                                                                                                                                                                                                                                                                      
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259  
         Q8IDC6_PLAF7     - -MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMGS 261
               SCOP domains d2rcya1 A:1-156 automated matches                                                                                                                           d2rcya2 A:157-262 automated matches                                                                        SCOP domains
               CATH domains 2rcyA01 A:1-154 NAD(P)-binding Rossmann-like Domain                                                                                                       2rcyA02 A:155-262 ProC C-terminal domain-like                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhhhhhhhhhhhh..hhh.eeee.........ee..hhhhhhhhh.eeee.....hhhhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rcy A   1 GmENIKLGFmGLGQmGSALAHGIANANIIKKENLFYYGPSKKNTTLNYmSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEmVGSENKIVWVmPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDmDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEmVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVmNAVEAACEKSKAmGS 262
                             |      10    |   20        30        40        50        60        70        80        90       100 |     110  |    120       130       140       150       160       170       180       190       200       210       220       230       240      |250       260  
                             |      10-MSE|                                49-MSE                                              102-MSE    113-MSE                                       159-MSE                                          208-MSE                                247-MSE      260-MSE
                             2-MSE       15-MSE

Chain B from PDB  Type:PROTEIN  Length:253
 aligned with Q8IDC6_PLAF7 | Q8IDC6 from UniProtKB/TrEMBL  Length:262

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
         Q8IDC6_PLAF7     3 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMGS 261
               SCOP domains d2rcyb1 B:4-156 automated     matches                                                                                                                    d2rcyb2 B:157-262 automated matches                                                                        SCOP domains
               CATH domains 2rcyB01 B:4-154 NAD(P)-bin    ding Ross mann-like Domain                                                                                               2rcyB02 B:155-262 ProC C-terminal domain-like                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..hhhhhhhhhhhhhhh..----.eee.....-...ee..hhhhhhhhh-.eee..hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rcy B   4 NIKLGFmGLGQmGSALAHGIANANII----LFYYGPSKK-TTLNYmSSNEELARHC-IIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEmVGSENKIVWVmPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDmDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEmVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVmNAVEAACEKSKAmGS 262
                                  | 13 |      23     |   -|       |-|    |  53     | |63        73        83        93       103       113       123       133       143       153     | 163       173       183       193       203    |  213       223       233       243   |   253      |  
                                 10-MSE|            29   34      42 |    |        59 |                                      102-MSE    113-MSE                                       159-MSE                                          208-MSE                                247-MSE      260-MSE
                                      15-MSE                       44    |          61                                                                                                                                                                                                         
                                                                        49-MSE

Chain C from PDB  Type:PROTEIN  Length:261
 aligned with Q8IDC6_PLAF7 | Q8IDC6 from UniProtKB/TrEMBL  Length:262

    Alignment length:261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
         Q8IDC6_PLAF7     1 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMGS 261
               SCOP domains d2rcyc1 C:2-156 automated matches                                                                                                                          d2rcyc2 C:157-262 automated matches                                                                        SCOP domains
               CATH domains -2rcyC01 C:3-154 NAD(P)-binding Rossmann-like Domain                                                                                                     2rcyC02 C:155-262 ProC C-terminal domain-like                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..hhhhhhhhhhhhh....hhh.eeee.........ee..hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhh....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rcy C   2 mENIKLGFmGLGQmGSALAHGIANANIIKKENLFYYGPSKKNTTLNYmSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEmVGSENKIVWVmPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDmDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEmVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVmNAVEAACEKSKAmGS 262
                            |       11   |    21        31        41       |51        61        71        81        91       101|      111 |     121       131       141       151       161       171       181       191       201      |211       221       231       241     | 251       261 
                            |      10-MSE|                                49-MSE                                              102-MSE    113-MSE                                       159-MSE                                          208-MSE                                247-MSE      260-MSE
                            2-MSE       15-MSE

Chain D from PDB  Type:PROTEIN  Length:248
 aligned with Q8IDC6_PLAF7 | Q8IDC6 from UniProtKB/TrEMBL  Length:262

    Alignment length:258
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        
         Q8IDC6_PLAF7     4 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMGS 261
               SCOP domains d2rcyd1 D:5-156 automated     matches                                                                                                                   d2rcyd2 D:157-262 automated matches                                                                        SCOP domains
               CATH domains 2rcyD01 D:5-154 NAD(P)-bi    nding Ros smann-like D     omain                                                                                         2rcyD02 D:155-262 ProC C-terminal domain-like                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..hhhhhhhhhhhhh....----.eee.....-...ee.......-----.eee.....hhhhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2rcy D   5 IKLGFmGLGQmGSALAHGIANANII----LFYYGPSKK-TTLNYmSSNEEL-----IIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEmVGSENKIVWVmPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDmDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEmVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVmNAVEAACEKSKAmGS 262
                                 |  14|       24    |   34       |44    |   54|     | 64        74        84        94       104       114       124       134       144       154    |  164       174       184       194       204   |   214       224       234       244  |    254     |  
                                10-MSE|            29   34      42 |    |    55    61                                      102-MSE    113-MSE                                       159-MSE                                          208-MSE                                247-MSE      260-MSE
                                     15-MSE                       44    |                                                                                                                                                                                                                     
                                                                       49-MSE

Chain E from PDB  Type:PROTEIN  Length:244
 aligned with Q8IDC6_PLAF7 | Q8IDC6 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      
         Q8IDC6_PLAF7     6 LGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMGS 261
               SCOP domains d2rcye1 E:7-156 autom      ated matches                                                                                                               d2rcye2 E:157-262 automated matches                                                                        SCOP domains
               CATH domains 2rcyE01 E:7-154 NAD(P      )-binding Rossmann-li ke   Domain                                                                                        2rcyE02 E:155-262 ProC C-terminal domain-like                                                                CATH domains
           Pfam domains (1) F420_oxidored-2rcyE01       E:7-93                                                     ------------   ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) F420_oxidored-2rcyE02       E:7-93                                                     ------------   ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) F420_oxidored-2rcyE03       E:7-93                                                     ------------   ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) F420_oxidored-2rcyE04       E:7-93                                                     ------------   ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) F420_oxidored-2rcyE05       E:7-93                                                     ------------   ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
         Sec.struct. author .eee..hhhhhhhhhhhhhhh------.eee.........ee......-...--.eee..hhhhhhhhhhhh........eee.....hhhhhhhhhh.---.eeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rcy E   7 LGFmGLGQmGSALAHGIANAN------LFYYGPSKKNTTLNYmSSNEE-ARH--IIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEmVGS---IVWVmPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDmDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEmVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVmNAVEAACEKSKAmGS 262
                               |    16        26|      |36        46  |    |56 |  |   66        76        86        96     |  |-  |   |116       126       136       146       156  |    166       176       186       196       206 |     216       226       236       246|      256   |  
                               |    |          27     34             49-MSE4 | | 61                                      102-MSE109   |                                           159-MSE                                          208-MSE                                247-MSE      260-MSE
                              10-MSE|                                       56 |                                            105     113-MSE                                                                                                                                                 
                                   15-MSE                                     58

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Family: automated matches (50)

Protein domain: automated matches (50)

Plasmodium falciparum [TaxId: 36329] (2)

1a	d2rcya2	A:157-262
1b	d2rcyb2	B:157-262
1c	d2rcyc2	C:157-262
1d	d2rcyd2	D:157-262
1e	d2rcye2	E:157-262

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Plasmodium falciparum [TaxId: 36329] (3)

2a	d2rcya1	A:1-156
2b	d2rcyb1	B:4-156
2c	d2rcyc1	C:2-156
2d	d2rcyd1	D:5-156
2e	d2rcye1	E:7-156

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7. (3)

1a	2rcyA01	A:1-154
1b	2rcyC01	C:3-154
1c	2rcyB01	B:4-154
1d	2rcyD01	D:5-154
1e	2rcyE01	E:7-154

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: ProC C-terminal domain-like fold (3)

Homologous Superfamily: ProC C-terminal domain-like (3)

Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7. (1)

2a	2rcyA02	A:155-262
2b	2rcyB02	B:155-262
2c	2rcyC02	C:155-262
2d	2rcyD02	D:155-262
2e	2rcyE02	E:155-262

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: F420_oxidored (5)

Plasmodium falciparum (isolate 3D7) (1)

1a	F420_oxidored-2rcyE01	E:7-93
1b	F420_oxidored-2rcyE02	E:7-93
1c	F420_oxidored-2rcyE03	E:7-93
1d	F420_oxidored-2rcyE04	E:7-93
1e	F420_oxidored-2rcyE05	E:7-93

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E (Q8IDC6_PLAF7 | Q8IDC6)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004735	pyrroline-5-carboxylate reductase activity	Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006561	proline biosynthetic process	The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2rcy)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2rcy
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q8IDC6_PLAF7 \| Q8IDC6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	1.5.1.2
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q8IDC6_PLAF7 \| Q8IDC6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2RCY)

(no "Related Entries Specified in the PDB File" available for 2RCY)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 58)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 10)

CATH Domains (2, 10)

Pfam Domains (1, 5)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File