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(-) Description

Title :  CRYSTAL STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM GALLERIA MELLONELLA HEMOLYMPH
 
Authors :  R. Kolodziejczyk, G. Bujacz, M. Jakob, A. Ozyhar, M. Jaskolski, M. Koch
Date :  20 Sep 07  (Deposition) - 04 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Galleria Mellonella, Hemolymph, Jhbp-Fold, Juvenile Hormone, Hormone Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Kolodziejczyk, G. Bujacz, M. Jakob, A. Ozyhar, M. Jaskolski, M. Kochman
Insect Juvenile Hormone Binding Protein Shows Ancestral Fol Present In Human Lipid-Binding Proteins.
J. Mol. Biol. V. 377 870 2008
PubMed-ID: 18291417  |  Reference-DOI: 10.1016/J.JMB.2008.01.026

(-) Compounds

Molecule 1 - JUVENILE HORMONE BINDING PROTEIN
    Chains: A, B
    Organism Common: GREATER WAX MOTH
    Organism Scientific: GALLERIA MELLONELLA
    Organism Taxid: 7137
    Other Details: GREATER WAX MOTH
    Tissue: HEMOLYMPH

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:94 , SER A:121BINDING SITE FOR RESIDUE NAG A 222
2AC2SOFTWAREASN B:72 , ASN B:94BINDING SITE FOR RESIDUE NAG B 222
3AC3SOFTWAREHIS A:207 , ARG A:210 , ARG A:214BINDING SITE FOR RESIDUE SO4 A 223
4AC4SOFTWAREHIS B:207 , ARG B:210 , ARG B:214BINDING SITE FOR RESIDUE SO4 B 223
5AC5SOFTWAREASN A:72 , ASN A:94 , HOH A:234 , HOH A:253BINDING SITE FOR RESIDUE GOL A 224
6AC6SOFTWARETYR B:30 , LYS B:71 , ASN B:72BINDING SITE FOR RESIDUE GOL B 224

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:10 -A:17
2A:151 -A:195
3B:10 -B:17
4B:151 -B:195

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Asp A:42 -Pro A:43
2Glu A:54 -Lys A:55
3Thr A:134 -Asp A:135
4Pro A:217 -Lys A:218
5Asp B:42 -Pro B:43

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RCK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RCK)

(-) Exons   (0, 0)

(no "Exon" information available for 2RCK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
 aligned with Q8ITP4_GALME | Q8ITP4 from UniProtKB/TrEMBL  Length:245

    Alignment length:221
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q8ITP4_GALME    21 SKLNLSTEPCDVSDIECISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTYTGEVTIEASAEGGAAYSYSVKTDDKGVEHYEAGPETISCEIFGEPTLSVSSTLEDALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAY 241
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhh..hhhhh......eeeeeeeeee....eeeeeeeeeeehhhhheeeeeeee....eeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeeee.......eeee...eeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rck A   1 SKLNLSTEPCDVSDIECISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTYTGEVTIEASAEGGAAYSYSVKTDDKGVEHYEAGPETVSCEIFGEPTLSVSSTLEDALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAY 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 


Chain B from PDB  Type:PROTEIN  Length:208
 aligned with Q8ITP4_GALME | Q8ITP4 from UniProtKB/TrEMBL  Length:245

    Alignment length:213
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238   
         Q8ITP4_GALME    29 PCDVSDIECISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTYTGEVTIEASAEGGAAYSYSVKTDDKGVEHYEAGPETISCEIFGEPTLSVSSTLEDALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAY 241
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) JHBP-2rckB01 B:9-221                                                                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) JHBP-2rckB02 B:9-221                                                                                                                                                                                                  Pfam domains (2)
         Sec.struct. author .....hhhhhhhhhhhhhhh..eeehhhheee...eeeeeeeee......eeeeeeeeeehhhhheeeeeeee....eeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeeee.-----.eeee...eeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rck B   9 PCDVSDIECISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTYTGEVTIEASAEGGAAYSYSVKT-----EHYEAGPETVSCEIFGEPTLSVSSTLEDALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAY 221
                                    18        28        38        48        58        68        78        88        98       108       118       128     |   - |     148       158       168       178       188       198       208       218   
                                                                                                                                                       134   140
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RCK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RCK)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: JHBP] (2)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2RCK)

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