2R87 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PURP FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ADP

Authors :   Y. Zhang, R. H. White, S. E. Ealick

Date :   10 Sep 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Atp-Grasp Superfamily, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhang, R. H. White, S. E. Ealick
Crystal Structure And Function Of 5-Formaminoimidazole-4-Carboxamide Ribonucleotide Synthetase From Methanocaldococcus Jannaschii.
Biochemistry V. 47 205 2008
PubMed-ID: 18069798 | Reference-DOI: 10.1021/BI701406G
(for further references see the PDB file header)

Molecule 1 - PURP PROTEIN PF1517
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	T7-7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PYROCOCCUS FURIOSUS
	Organism Taxid	:	2261

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 25)

No.	Name	Count	Type	Full Name
1	ADP	6	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	PO4	19	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 13)

No.	Name	Count	Type	Full Name
1	ADP	3	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	PO4	10	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 12)

No.	Name	Count	Type	Full Name
1	ADP	3	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	PO4	9	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:10 , SER A:71 , ARG C:238 , SER C:240 , HOH C:505	BINDING SITE FOR RESIDUE PO4 C 401
02	AC2	SOFTWARE	HIS A:11 , ARG A:202 , ARG A:287 , ALA A:290 , HOH A:508 , HOH A:601 , HOH A:602	BINDING SITE FOR RESIDUE PO4 A 402
03	AC3	SOFTWARE	TYR A:306 , ARG A:308	BINDING SITE FOR RESIDUE PO4 A 501
04	AC4	SOFTWARE	ARG A:238 , SER A:240 , HOH A:510 , SER B:10 , HIS B:11 , SER B:71	BINDING SITE FOR RESIDUE PO4 A 401
05	AC5	SOFTWARE	HIS B:11 , ARG B:202 , ARG B:287 , ALA B:290 , HOH B:571 , HOH B:574	BINDING SITE FOR RESIDUE PO4 B 402
06	AC6	SOFTWARE	ARG B:191 , ARG B:308 , MET B:318 , HOH B:589	BINDING SITE FOR RESIDUE PO4 B 501
07	AC7	SOFTWARE	ARG B:238 , SER B:240 , HOH B:540 , SER C:10 , SER C:71	BINDING SITE FOR RESIDUE PO4 B 401
08	AC8	SOFTWARE	HIS C:11 , ARG C:202 , ARG C:287 , ALA C:290 , HOH C:548	BINDING SITE FOR RESIDUE PO4 C 402
09	AC9	SOFTWARE	ARG C:105 , LYS C:109 , HOH C:558 , HOH C:569	BINDING SITE FOR RESIDUE PO4 C 500
10	BC1	SOFTWARE	ARG C:191 , TYR C:306 , ARG C:308 , MET C:318 , HOH C:589	BINDING SITE FOR RESIDUE PO4 C 501
11	BC2	SOFTWARE	SER D:10 , SER D:71 , HIS D:75 , ARG F:238 , SER F:240 , HOH F:504	BINDING SITE FOR RESIDUE PO4 F 401
12	BC3	SOFTWARE	HIS D:11 , ARG D:202 , ARG D:287 , ALA D:290 , HOH D:546	BINDING SITE FOR RESIDUE PO4 D 402
13	BC4	SOFTWARE	TYR D:306 , ARG D:308	BINDING SITE FOR RESIDUE PO4 D 501
14	BC5	SOFTWARE	ARG D:238 , SER D:240 , HOH D:513 , SER E:10 , SER E:71	BINDING SITE FOR RESIDUE PO4 D 401
15	BC6	SOFTWARE	HIS E:11 , ARG E:202 , ARG E:287 , ALA E:290 , HOH E:536	BINDING SITE FOR RESIDUE PO4 E 402
16	BC7	SOFTWARE	ARG E:191 , ARG E:308	BINDING SITE FOR RESIDUE PO4 E 501
17	BC8	SOFTWARE	ARG E:238 , SER E:240 , HOH E:508 , SER F:10 , SER F:71 , HIS F:75	BINDING SITE FOR RESIDUE PO4 E 401
18	BC9	SOFTWARE	HIS F:11 , ARG F:202 , ARG F:287 , ALA F:290 , HOH F:502	BINDING SITE FOR RESIDUE PO4 F 402
19	CC1	SOFTWARE	ARG F:191 , ARG F:308	BINDING SITE FOR RESIDUE PO4 F 501
20	CC2	SOFTWARE	PRO A:116 , ILE A:130 , LYS A:132 , GLY A:138 , GLY A:139 , TYR A:142 , GLN A:173 , GLU A:174 , TYR A:175 , ARG A:202 , GLU A:204 , GLU A:270 , PHE A:282 , GLU A:283 , HOH A:514 , HOH A:553 , ARG B:212	BINDING SITE FOR RESIDUE ADP A 400
21	CC3	SOFTWARE	PRO B:116 , ILE B:130 , LYS B:132 , LYS B:137 , GLY B:138 , GLY B:139 , TYR B:142 , GLN B:173 , GLU B:174 , TYR B:175 , GLU B:204 , TYR B:227 , GLU B:270 , PHE B:282 , GLU B:283 , HOH B:564 , HOH B:568 , ARG C:212	BINDING SITE FOR RESIDUE ADP B 400
22	CC4	SOFTWARE	ARG A:212 , ILE C:130 , LYS C:132 , LYS C:137 , GLY C:138 , GLY C:139 , TYR C:142 , GLN C:173 , GLU C:174 , TYR C:175 , GLU C:204 , GLU C:270 , PHE C:282 , GLU C:283 , HOH C:522 , HOH C:531 , HOH C:541	BINDING SITE FOR RESIDUE ADP C 400
23	CC5	SOFTWARE	PRO D:116 , ILE D:130 , LYS D:132 , GLY D:138 , GLY D:139 , TYR D:142 , GLN D:173 , GLU D:174 , TYR D:175 , ARG D:202 , GLU D:204 , GLU D:270 , PHE D:282 , GLU D:283 , ARG E:212	BINDING SITE FOR RESIDUE ADP D 400
24	CC6	SOFTWARE	ILE E:130 , LYS E:132 , ALA E:136 , GLY E:138 , GLY E:139 , TYR E:142 , GLN E:173 , GLU E:174 , TYR E:175 , ARG E:202 , GLU E:204 , TYR E:227 , PHE E:282 , GLU E:283 , HOH E:516 , ARG F:212	BINDING SITE FOR RESIDUE ADP E 400
25	CC7	SOFTWARE	ARG D:212 , ARG F:101 , ILE F:130 , LYS F:132 , LYS F:137 , GLY F:138 , GLY F:139 , TYR F:142 , GLN F:173 , GLU F:174 , TYR F:175 , TYR F:182 , ARG F:202 , GLU F:204 , GLU F:270 , PHE F:282 , GLU F:283	BINDING SITE FOR RESIDUE ADP F 400

(no "SS Bond" information available for 2R87)

Asymmetric Unit

No.	Residues
1	Ser A:205	-	Asn A:206
2	Ser B:205	-	Asn B:206
3	Ser C:205	-	Asn C:206
4	Ser D:205	-	Asn D:206
5	Ser E:205	-	Asn E:206
6	Ser F:205	-	Asn F:206

(no "SAP(SNP)/Variant" information available for 2R87)

(no "PROSITE Motif" information available for 2R87)

(no "Exon" information available for 2R87)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87a1 A:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87a2 A:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87A01 A:1-87  [code=3.40.50.20, no name defined]                                     2r87A02 A:88-115,A:178-334  2r87A03 A:116-177 ATP-grasp fold, A domain                    2r87A02 A:88-115,A:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee....hhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhh......ee.hhhhh...eeee..........eee.hhhhhhhhhhhhhh..hhhhh...eeee....eeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhhh....eeeeeeee.ee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeee...hhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 A   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain B from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87b1 B:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87b2 B:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87B01 B:1-87  [code=3.40.50.20, no name defined]                                     2r87B02 B:88-115,B:178-334  2r87B03 B:116-177 ATP-grasp fold, A domain                    2r87B02 B:88-115,B:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhh......ee.hhhhh...eeee..........eee.hhhhhhhhhhhhh...........eeee....eeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhhh....eeeeeeee.ee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeee...hhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 B   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain C from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87c1 C:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87c2 C:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87C01 C:1-87  [code=3.40.50.20, no name defined]                                     2r87C02 C:88-115,C:178-334  2r87C03 C:116-177 ATP-grasp fold, A domain                    2r87C02 C:88-115,C:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhh......ee.hhhhh...eeee..........eee.hhhhhhhhhhhhhh..........eeee....eeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhhh....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeee...hhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 C   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain D from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87d1 D:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87d2 D:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87D01 D:1-87  [code=3.40.50.20, no name defined]                                     2r87D02 D:88-115,D:178-334  2r87D03 D:116-177 ATP-grasp fold, A domain                    2r87D02 D:88-115,D:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhh.........hhhhh...eeee..........eee.hhhhhhhhhhhhh...hhhhh...eeee....eeeeeeeeee....eeeeeeeeeeeeeehhhhh..hhhhhhhhh....eeeeeeee.ee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeee...hhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 D   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain E from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87e1 E:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87e2 E:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87E01 E:1-87  [code=3.40.50.20, no name defined]                                     2r87E02 E:88-115,E:178-334  2r87E03 E:116-177 ATP-grasp fold, A domain                    2r87E02 E:88-115,E:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhh......ee.hhhhh...eeee..........eee.hhhhhhhhhhhhh...........eeee....eeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhhh....eeeeeeee.ee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeee...hhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 E   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain F from PDB  Type:PROTEIN  Length:334
 aligned with PURP_PYRFU | Q8U0R7 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           PURP_PYRFU     1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
               SCOP domains d2r87f1 F:1-99 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                   d2r87f2 F:100-334 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP                                                                                                                                                         SCOP domains
               CATH domains 2r87F01 F:1-87  [code=3.40.50.20, no name defined]                                     2r87F02 F:88-115,F:178-334  2r87F03 F:116-177 ATP-grasp fold, A domain                    2r87F02 F:88-115,F:178-334 ATP-grasp fold, B domain                                                                                                           CATH domains
           Pfam domains (1) ----DUF1246-2r87F07 F:5-120                                                                                             -----------------------------DUF1297-2r87F01 F:150-334                                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) ----DUF1246-2r87F08 F:5-120                                                                                             -----------------------------DUF1297-2r87F02 F:150-334                                                                                                                                                                 Pfam domains (2)
           Pfam domains (3) ----DUF1246-2r87F09 F:5-120                                                                                             -----------------------------DUF1297-2r87F03 F:150-334                                                                                                                                                                 Pfam domains (3)
           Pfam domains (4) ----DUF1246-2r87F10 F:5-120                                                                                             -----------------------------DUF1297-2r87F04 F:150-334                                                                                                                                                                 Pfam domains (4)
           Pfam domains (5) ----DUF1246-2r87F11 F:5-120                                                                                             -----------------------------DUF1297-2r87F05 F:150-334                                                                                                                                                                 Pfam domains (5)
           Pfam domains (6) ----DUF1246-2r87F12 F:5-120                                                                                             -----------------------------DUF1297-2r87F06 F:150-334                                                                                                                                                                 Pfam domains (6)
         Sec.struct. author ...eeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh......eee....hhhhhhhh.eee....hhhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh.........hhhhh...eeee..........eee.hhhhhhhhhhhhh...hhhhh...eeee....eeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhhh....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeee...hhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.hhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r87 F   1 MKVRIATYASHSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLEKVLT 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ATP-grasp (191)

Superfamily: Glutathione synthetase ATP-binding domain-like (158)

Family: PurP ATP-binding domain-like (9)

Protein domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP (9)

Pyrococcus furiosus [TaxId: 2261] (4)

1a	d2r87a2	A:100-334
1b	d2r87b2	B:100-334
1c	d2r87c2	C:100-334
1d	d2r87d2	D:100-334
1e	d2r87e2	E:100-334
1f	d2r87f2	F:100-334

Class: Alpha and beta proteins (a/b) (23833)

Fold: PreATP-grasp domain (131)

Superfamily: PreATP-grasp domain (131)

Family: PurP N-terminal domain-like (9)

Protein domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP (9)

Pyrococcus furiosus [TaxId: 2261] (4)

2a	d2r87a1	A:1-99
2b	d2r87b1	B:1-99
2c	d2r87c1	C:1-99
2d	d2r87d1	D:1-99
2e	d2r87e1	E:1-99
2f	d2r87f1	F:1-99

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: D-amino Acid Aminotransferase; Chain A, domain 1 (175)

Homologous Superfamily: ATP-grasp fold, B domain (118)

Pyrococcus furiosus. Organism_taxid: 2261. (4)

1a	2r87A02	A:88-115,A:178-334
1b	2r87B02	B:88-115,B:178-334
1c	2r87C02	C:88-115,C:178-334
1d	2r87D02	D:88-115,D:178-334
1e	2r87E02	E:88-115,E:178-334
1f	2r87F02	F:88-115,F:178-334

Topology: Dna Ligase; domain 1 (375)

Homologous Superfamily: ATP-grasp fold, A domain (109)

Pyrococcus furiosus. Organism_taxid: 2261. (4)

2a	2r87A03	A:116-177
2b	2r87B03	B:116-177
2c	2r87C03	C:116-177
2d	2r87D03	D:116-177
2e	2r87E03	E:116-177
2f	2r87F03	F:116-177

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.20, no name defined] (85)

Pyrococcus furiosus. Organism_taxid: 2261. (4)

3a	2r87A01	A:1-87
3b	2r87B01	B:1-87
3c	2r87C01	C:1-87
3d	2r87D01	D:1-87
3e	2r87E01	E:1-87
3f	2r87F01	F:1-87

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ATP-grasp (83)

Family: DUF1297 (6)

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (3)

1a	DUF1297-2r87F01	F:150-334
1b	DUF1297-2r87F02	F:150-334
1c	DUF1297-2r87F03	F:150-334
1d	DUF1297-2r87F04	F:150-334
1e	DUF1297-2r87F05	F:150-334
1f	DUF1297-2r87F06	F:150-334

Clan: no clan defined [family: DUF1246] (6)

Family: DUF1246 (6)

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (3)

2a	DUF1246-2r87F07	F:5-120
2b	DUF1246-2r87F08	F:5-120
2c	DUF1246-2r87F09	F:5-120
2d	DUF1246-2r87F10	F:5-120
2e	DUF1246-2r87F11	F:5-120
2f	DUF1246-2r87F12	F:5-120

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (PURP_PYRFU | Q8U0R7)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0016879	ligase activity, forming carbon-nitrogen bonds	Catalysis of the joining of two molecules, or two groups within a single molecule, via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0006188	IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate.
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

Asymmetric Unit
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	2r87
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	PURP_PYRFU \| Q8U0R7
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UniProtKB/Swiss-Prot
	PURP_PYRFU \| Q8U0R7	:	2r84 2r85 2r86

2r84	SAME PROTEIN WITH COMPLEXED WITH AMP AND AICAR
2r85	SAME PROTEIN WITH COMPLEXED WITH AMP
2r86	SAME PROTEIN WITH COMPLEXED WITH ATP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (2, 12)

CATH Domains (3, 18)

Pfam Domains (2, 12)

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