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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS STEAROTHERMOPHILUS UVRA
 
Authors :  Y. Inuzuka, D. Pakotiprapha, B. R. Bowman, D. Jeruzalmi, G. L. Verdine
Date :  05 Sep 07  (Deposition) - 08 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Uvra, Nucleotide Excision Repair, Dna Repair, Abc Atpase, Atp-Binding Cassette, Dna Damage, Dna Excision, Dna-Binding, Excision Nuclease, Metal-Binding, Nucleotide-Binding, Sos Response, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Pakotiprapha, Y. Inuzuka, B. R. Bowman, G. F. Moolenaar, N. Goosen, D. Jeruzalmi, G. L. Verdine
Crystal Structure Of Bacillus Stearothermophilus Uvra Provides Insight Into Atp-Modulated Dimerization, Uvrb Interaction, And Dna Binding.
Mol. Cell V. 29 122 2008
PubMed-ID: 18158267  |  Reference-DOI: 10.1016/J.MOLCEL.2007.10.026

(-) Compounds

Molecule 1 - EXCINUCLEASE ABC SUBUNIT A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UVRA
    Gene: UVRA
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 272567
    Strain: 10

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 40)

Asymmetric/Biological Unit (3, 40)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MSE30Mod. Amino AcidSELENOMETHIONINE
3ZN6Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:12 , ASN A:13 , LEU A:32 , GLY A:34 , SER A:35 , GLY A:36 , LYS A:37 , SER A:38 , SER A:39 , TYR A:816 , MSE A:817 , GLN A:821 , HOH A:1007BINDING SITE FOR RESIDUE ADP A 1000
02AC2SOFTWARETYR A:475 , ARG A:480 , HIS A:618 , ASN A:619 , VAL A:638 , GLY A:640 , SER A:641 , GLY A:642 , LYS A:643 , SER A:644 , THR A:645 , HOH A:1008BINDING SITE FOR RESIDUE ADP A 1001
03AC3SOFTWARECYS A:120 , HIS A:123 , CYS A:250 , CYS A:253BINDING SITE FOR RESIDUE ZN A 1004
04AC4SOFTWARECYS A:274 , CYS A:277 , CYS A:404 , CYS A:407BINDING SITE FOR RESIDUE ZN A 1005
05AC5SOFTWARECYS A:736 , CYS A:739 , CYS A:759 , CYS A:762BINDING SITE FOR RESIDUE ZN A 1006
06AC6SOFTWAREHIS B:12 , LEU B:32 , GLY B:34 , SER B:35 , GLY B:36 , LYS B:37 , SER B:38 , SER B:39 , GLY B:563 , TYR B:816 , GLN B:821 , THR B:825BINDING SITE FOR RESIDUE ADP B 1002
07AC7SOFTWARETYR B:475 , ARG B:480 , HIS B:618 , ASN B:619 , VAL B:638 , SER B:639 , GLY B:640 , SER B:641 , GLY B:642 , LYS B:643 , SER B:644 , THR B:645 , GLY B:905 , HOH B:1011BINDING SITE FOR RESIDUE ADP B 1003
08AC8SOFTWARECYS B:120 , HIS B:123 , CYS B:250 , CYS B:253BINDING SITE FOR RESIDUE ZN B 1007
09AC9SOFTWARECYS B:274 , CYS B:277 , CYS B:404 , CYS B:407BINDING SITE FOR RESIDUE ZN B 1008
10BC1SOFTWARECYS B:736 , CYS B:739 , CYS B:759 , CYS B:762BINDING SITE FOR RESIDUE ZN B 1009

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R6F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R6F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R6F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R6F)

(-) Exons   (0, 0)

(no "Exon" information available for 2R6F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:899
 aligned with Q5KVB6_GEOKA | Q5KVB6 from UniProtKB/TrEMBL  Length:955

    Alignment length:949
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943         
         Q5KVB6_GEOKA     4 MDKIVVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQMVDRLLAYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDGEMRELTEDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPQSSQYYPQLLEAVCRHYGIPMDVPVRDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRGIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVEESHTGRYLKPILERDRARMQAQYEA 952
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --2r6fA01 A:3-90,A:486-586 P-loop containing nucleotide triphosphate hydrolases           2r6fA02 A:91-129,A:248-281,A:404-485   2r6fA03 A:130-247 ATP-gr                                              asp fold, A domain                              2r6fA02                           2r6fA04 A:282-403 ABC transp    orter ATPase domain-like                                                                  2r6fA02 A:91-129,A:248-281,A:404-485 ABC transporter ATPase  like domain          2r6fA01 A:3-90,A:486-586 P-loop containing nucleotide triphosphate hydrolases                        2r6fA05 A:587-687,A:827-948 P-loop containing nucleotide triphosphate hydrolases                     -2r6fA06 A:689-826 ABC transporter ATPase  like domain                                                                                     2r6fA05 A:587-687,A:827-948 P-loop containing nucleotide triphosphate hydrolases                                          - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......eeeeee...eeeeee....hhhhhhh.hhhhhhhhhhhh..hhhhhhhhhh.....eeeee....eeee...........hhhhhhhhhhhhhhhhhhh.ee............hhhhhhhhhhh.....eeeeee.----------------------------------------------..eeeeeee....hhhhhhhhhhhhhhhh..eeeeee.....eeee..ee......eee..hhhhhh...............eeeeehhhhhh.....hhhhh.......----hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhh...hhhhhhh..eeeee...............ee....hhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhh..eeeee...hhhhh..eeeee............hhhhhh.................eeeeeee.......eeeeee...eee.......hhhhhhh.hhhhhhhhhhhh.........eeehhhhh.eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhh.......................eeee.......eeee...........hhhhh.....hhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh......eeeeee......hhhhhhhhhhhhhhhhhh..eeeee..hhhhhh...eeeee..........eeeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r6f A   1 mDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQmEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQmVDRLLSYPERTKmQILAP----------------------------------------------IDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEP----YYPQLLEAVCRHYGIPmDVPVKDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQmEKYmAEQPCPTCQGYRLKKESLAVLVGGKHIGEVTAmSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSmRDLGNTLIVVEHDEDTmLAADYLIDIGPGAGIHGGEVVAAGTPEEVmNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEmHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDmTVEDALDFFASIPKIKRKLETLYDVGLGYmKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARmQARYEA 949
                            |       10        20        30        40        50        60       |70        80        90       100       110       120       130    |  140       150  |      -         -         -         -       200       210       220       230       240       250       260       270       280       290       300        |-   |   320       330       340       350       360       370       380       390    |  400       410       420       430 |     440       450       460       470       480       490       500       510       520       530 |     540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      |790       800       810      |820       830       840       850       860       870       880       890       900       910       920       930       940  |      
                            |                                                                 68-MSE                                                            135-MSE      148-MSE3                                            200                                                                                                          309  314             330-MSE                                                          395-MSE                              432-MSE                                                                                             532-MSE          549-MSE                       579-MSE                                                                                                                                                                   749-MSE                               787-MSE                       817-MSE                                                                                                                       943-MSE  
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                                       399-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:879
 aligned with Q5KVB6_GEOKA | Q5KVB6 from UniProtKB/TrEMBL  Length:955

    Alignment length:949
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943         
         Q5KVB6_GEOKA     4 MDKIVVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQMVDRLLAYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDGEMRELTEDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPQSSQYYPQLLEAVCRHYGIPMDVPVRDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRGIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVEESHTGRYLKPILERDRARMQAQYEA 952
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-2r6fB01 B:644-857                                                                                                                                                                                            -------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-2r6fB02 B:644-857                                                                                                                                                                                            -------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-2r6fB03 B:644-857                                                                                                                                                                                            -------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-2r6fB04 B:644-857                                                                                                                                                                                            -------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeeeeee.......eeeeee...eeeee.....hhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhh....eeeee....eeee...........hhhhhhhhhhhhhhhhhhhhee............hhhhhhhhhh.....eeee..-----------------------------------------------------.eeee...hhhhhhhhhhhhhhhh.-----------------..............hhhhh................eeeeehhhhhh.....hhhhh...........hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.......eeee.....eeee.....hhhhhhhhhhhhh...hhhhhhh..eeeee...............ee....hhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh......eeeee.........hhhhhhhhhhhhhh...eeeee..hhhhhhhh.eeeee..........eeeeehhhhhhh...hhhhhhhhh................eeeeeee.......eeeeee...eeeee.....hhhhhhh.hhhhhhhhhhh..........eeehhhhh.eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh......................eeee.......eeee.....................hhhhhhh.hhhhhhhhh....hhhhhhhhhhhhh.............hhhhhhhhhhhhhhh......eeeeee......hhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhh.eeeee...hhhhh..eee..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r6f B   1 mDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQmEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQmVDRLLSYPERTKmQIL-----------------------------------------------------DRIIIKDGIAARLADSLETALKLAD-----------------KHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPQSSQYYPQLLEAVCRHYGIPmDVPVKDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQmEKYmAEQPCPTCQGYRLKKESLAVLVGGKHIGEVTAmSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSmRDLGNTLIVVEHDEDTmLAADYLIDIGPGAGIHGGEVVAAGTPEEVmNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEmHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDmTVEDALDFFASIPKIKRKLETLYDVGLGYmKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARmQARYEA 949
                            |       10        20        30        40        50        60       |70        80        90       100       110       120       130    |  140       150|        -         -         -         -         -    |  210       220        |-         -      |250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    |  400       410       420       430 |     440       450       460       470       480       490       500       510       520       530 |     540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      |790       800       810      |820       830       840       850       860       870       880       890       900       910       920       930       940  |      
                            1-MSE                                                             68-MSE                                                            135-MSE      148-MSE                                                  205                     229               247                                                                                330-MSE                                                          395-MSE                              432-MSE                                                                                             532-MSE          549-MSE                       579-MSE                                                                                                                                                                   749-MSE                               787-MSE                       817-MSE                                                                                                                       943-MSE  
                                                                                                                                                                                151                                                                                                                                                                                                                                                     399-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R6F)

(-) CATH Domains  (4, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q5KVB6_GEOKA | Q5KVB6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0009381    excinuclease ABC activity    Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid at sites flanking regions of damaged DNA to which the Uvr ABC excinuclease complexes bind.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0009432    SOS response    An error-prone process for repairing damaged microbial DNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006289    nucleotide-excision repair    A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009380    excinuclease repair complex    Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and two B subunits bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving behind a stable complex between B subunits and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting gap.

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