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(-) Description

Title :  CRYSTAL STRUCTURE OF MTH_862 PROTEIN OF UNKNOWN FUNCTION FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS
 
Authors :  J. Osipiuk, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  30 Aug 07  (Deposition) - 11 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (1x)
Biol. Unit 3:  D,E  (1x)
Keywords :  Unknown Function, Structural Genomics, Apc5901, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Mth_862 Protein Of Unknown Function From Methanothermobacter Thermautotrophicus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN MTH_862
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MTH_862
    Organism Scientific: METHANOTHERMOBACTER THERMAUTOTROPHICUS
    Organism Taxid: 187420
    Strain: DELTA H

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (1x):   C  
Biological Unit 3 (1x):    DE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1OCS5Mod. Amino AcidCYSTEINESULFONIC ACID
2SO45Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1OCS2Mod. Amino AcidCYSTEINESULFONIC ACID
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1OCS1Mod. Amino AcidCYSTEINESULFONIC ACID
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1OCS2Mod. Amino AcidCYSTEINESULFONIC ACID
2SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , ILE A:10 , LYS A:11 , HOH A:705 , HOH A:730 , HOH A:778 , MET B:124BINDING SITE FOR RESIDUE SO4 A 701
2AC2SOFTWAREMET A:124 , MET A:126 , GLY B:9 , ILE B:10 , LYS B:11 , HOH B:704 , HOH B:745 , HOH B:778BINDING SITE FOR RESIDUE SO4 B 702
3AC3SOFTWAREGLY C:9 , ILE C:10 , LYS C:11 , MET C:124 , MET C:126 , HOH C:716 , HOH C:739 , HOH C:765BINDING SITE FOR RESIDUE SO4 C 703
4AC4SOFTWAREGLY D:9 , ILE D:10 , LYS D:11 , HOH D:705 , HOH D:715 , MET E:124 , MET E:126BINDING SITE FOR RESIDUE SO4 D 704
5AC5SOFTWAREMET D:124 , MET D:126 , GLY E:9 , ILE E:10 , LYS E:11 , HOH E:709BINDING SITE FOR RESIDUE SO4 E 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R47)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R47)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R47)

(-) Exons   (0, 0)

(no "Exon" information available for 2R47)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Y862_METTH | O26950 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                              1                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148     
           Y862_METTH     - --MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2r47A01 A:8-145  [code=3.40.50.2300, no name defined]                                                                                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeehhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee..hhhh.eeeeee..eeeeeee....eeeeeee.hhhh.....hhhhhhhhhhhheeeeeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r47 A  -1 GHMEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVcTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
                                     8        18        28       |38        48        58        68        78        88        98       108       118       128       138       148     
                                                                36-OCS                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:155
 aligned with Y862_METTH | O26950 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                              1                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148     
           Y862_METTH     - --MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2r47B01 B:8-145  [code=3.40.50.2300, no name defined]                                                                                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeehhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee..hhhh.eeeeee..eeeeeee....eeeeeee.hhhh.....hhhhhhhhhhhheeeeeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r47 B  -1 GHMEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVcTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
                                     8        18        28       |38        48        58        68        78        88        98       108       118       128       138       148     
                                                                36-OCS                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:155
 aligned with Y862_METTH | O26950 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                              1                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148     
           Y862_METTH     - --MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2r47C01 C:8-145  [code=3.40.50.2300, no name defined]                                                                                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee..hhhh.eeeeee..eeeeeee....eeeeeee.hhhh.....hhhhhhhhhhhheeeeeeeeeeee.hhhhhhhhhhhh...eeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r47 C  -1 GHMEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVcTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
                                     8        18        28       |38        48        58        68        78        88        98       108       118       128       138       148     
                                                                36-OCS                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:153
 aligned with Y862_METTH | O26950 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                              1                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148     
           Y862_METTH     - --MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2r47D01 D:8-145  [code=3.40.50.2300, no name defined]                                                                                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeehhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee..hhhh.eeeeee..eeeeeee....eeeeeee.hhhh.--..hhhhhhhhhhhheeeeeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r47 D  -1 GHMEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVcTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMP--GSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
                                     8        18        28       |38        48        58        68        78        88      | 98       108       118       128       138       148     
                                                                36-OCS                                                     95 98                                                       


Chain E from PDB  Type:PROTEIN  Length:155
 aligned with Y862_METTH | O26950 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                              1                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148     
           Y862_METTH     - --MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2r47E01 E:8-145  [code=3.40.50.2300, no name defined]                                                                                     -------- CATH domains
           Pfam domains (1) ---------DUF2124-2r47E01 E:8-150                                                                                                                        --- Pfam domains (1)
           Pfam domains (2) ---------DUF2124-2r47E02 E:8-150                                                                                                                        --- Pfam domains (2)
           Pfam domains (3) ---------DUF2124-2r47E03 E:8-150                                                                                                                        --- Pfam domains (3)
           Pfam domains (4) ---------DUF2124-2r47E04 E:8-150                                                                                                                        --- Pfam domains (4)
           Pfam domains (5) ---------DUF2124-2r47E05 E:8-150                                                                                                                        --- Pfam domains (5)
         Sec.struct. author ...eeeeeeehhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee..hhhh.eeeee....eeeeee....eeeeeee.hhhh.....hhhhhhhhhhhheeeeeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r47 E  -1 GHMEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVcTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG 153
                                     8        18        28       |38        48        58        68        78        88        98       108       118       128       138       148     
                                                                36-OCS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R47)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF2124] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2R47)

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  2r47
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  Y862_METTH | O26950
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 Related Entries

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