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(-) Description

Title :  CRYSTAL STRUCTURE OF ATP12P FROM PARACOCCUS DENITRIFICANS
 
Authors :  A. V. Ludlam, J. S. Brunzelle, D. L. Gatti, S. H. Ackerman
Date :  28 Aug 07  (Deposition) - 25 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Chaperone F1 Atpase Assembly Atp12P, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ludlam, J. Brunzelle, T. Pribyl, X. Xu, D. L. Gatti, S. H. Ackerman
Chaperones Of F1-Atpase.
J. Biol. Chem. V. 284 17138 2009
PubMed-ID: 19383603  |  Reference-DOI: 10.1074/JBC.M109.002568

(-) Compounds

Molecule 1 - ATP12 ATPASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PDEN_0792
    Organism Scientific: PARACOCCUS DENITRIFICANS
    Organism Taxid: 318586
    Strain: PD1222

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:105 , ASP A:121 , ILE A:137 , HIS A:139 , PRO A:148 , LEU A:151 , LEU A:152 , HOH A:1037 , HOH A:1315 , HOH A:1316BINDING SITE FOR RESIDUE TRS A 2001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R31)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:108 -Pro A:109

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R31)

(-) Exons   (0, 0)

(no "Exon" information available for 2R31)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
 aligned with A1B060_PARDP | A1B060 from UniProtKB/TrEMBL  Length:236

    Alignment length:236
                             1                                                                                                                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229      
         A1B060_PARDP     - -MSEWKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASRLAAMRDSERFWHLTR 235
               SCOP domains d2r31a_ A: ATP12 ATPase                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------ATP12-2r31A01 A:10-131                                                                                                    ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeeeee..eeeeee..ee............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee...hhhhhhhhhhhhhhhhhhhhhhh......ee.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r31 A   3 HMSEWKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASRLAAMRDSERFWHLTR 238
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2R31)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: ATP12] (2)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A1B060_PARDP | A1B060)
biological process
    GO:0043461    proton-transporting ATP synthase complex assembly    The aggregation, arrangement and bonding together of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes.

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  2r31
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A1B060_PARDP | A1B060: 2p4x 2zd2

(-) Related Entries Specified in the PDB File

2p4f 2p4x