Chain A from PDB Type:PROTEIN Length:131
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:138
37 47 57 67 77 87 97 107 117 127 137 147 157
LPTA_ECOLI 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2r1aA00 A:28-165 Lip opolysaccharide (LPS) transp ort protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..hhhhh..eee........--.........eee....eee.........-----.............ee.......ee.............eeeeeeeeee......eeeeeeeee.......ee............ Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2r1a A 28 VTGDTDQPIHIESDQQSLDM--NVVTFTGNVIVTQGTIKINADKVVVTRP-----KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
37 47 | 57 67 77 | 87 97 107 117 127 137 147 157
47 50 77 83
Chain B from PDB Type:PROTEIN Length:134
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:138
38 48 58 68 78 88 98 108 118 128 138 148 158
LPTA_ECOLI 29 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2r1aB00 B:29-166 Lipopolysaccharide (LPS) transpor t protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ........ee...eee......eeeee..eeeee..eeeee...eee...----.....ee....eeee.......eeee..ee.......ee..eeeeeee...eeeeeee.eee....eeeee.....eeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2r1a B 29 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPG----KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
38 48 58 68 78 | 88 98 108 118 128 138 148 158
78 83
Chain C from PDB Type:PROTEIN Length:135
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:138
38 48 58 68 78 88 98 108 118 128 138 148 158
LPTA_ECOLI 29 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2r1aC00 C:29-166 Lipopolysaccharide (LPS) transport protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .......eeee...ee........eeeeeeeee.....eeeeeee......---..eeee.......................eeee....eeee...eeeee..eeeee.eeeee....eeeee......eee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2r1a C 29 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGG---KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
38 48 58 68 78| | 88 98 108 118 128 138 148 158
79 83
Chain D from PDB Type:PROTEIN Length:136
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:139
37 47 57 67 77 87 97 107 117 127 137 147 157
LPTA_ECOLI 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2r1aD00 D:28-166 Lipopolysaccharide (LPS) transport protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eeeee.eeeee....eeeee..eeee.....eee...eee....---..eee...................................ee...........ee..ee..................ee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r1a D 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGG---KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 166
37 47 57 67 77 | | 87 97 107 117 127 137 147 157
79 83
Chain E from PDB Type:PROTEIN Length:132
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:137
40 50 60 70 80 90 100 110 120 130 140 150 160
LPTA_ECOLI 31 DTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPS 167
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2r1aE00 E:31-167 Lipopolysaccharide (LPS) trans port protein A like domain CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...........eeeee....eeeeeeee..........eeeeeee..-----..eeeee.....................eeeee....eeeee...............eeeee....ee................. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r1a E 31 DTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRP-----KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPS 167
40 50 60 70 | - | 90 100 110 120 130 140 150 160
77 83
Chain F from PDB Type:PROTEIN Length:132
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:138
37 47 57 67 77 87 97 107 117 127 137 147 157
LPTA_ECOLI 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2r1aF00 F:28-165 Lipopolysaccharide (LPS) transpo rt protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ........ee....eeee......eeee..eeeee....eee.......------..ee...........................ee............................................eeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2r1a F 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTR------KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
37 47 57 67 |- | 87 97 107 117 127 137 147 157
76 83
Chain G from PDB Type:PROTEIN Length:135
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:138
37 47 57 67 77 87 97 107 117 127 137 147 157
LPTA_ECOLI 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2r1aG00 G:28-165 Lipopolysaccharide (LPS) transport protein A like domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ............eeeee......eeeeeeee..ee..ee......eee....---..eee..........................ee........................ee.........eee........ee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2r1a G 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGG---KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLV 165
37 47 57 67 77 | | 87 97 107 117 127 137 147 157
79 83
Chain H from PDB Type:PROTEIN Length:131
aligned with LPTA_ECOLI | P0ADV1 from UniProtKB/Swiss-Prot Length:185
Alignment length:137
37 47 57 67 77 87 97 107 117 127 137 147 157
LPTA_ECOLI 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL 164
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2r1aH00 H:28-164 Lipopolysaccharide (LPS) transpo rt protein A like domain CATH domains
Pfam domains (1) ---------OstA-2r1aH01 H:37-149 --------------- Pfam domains (1)
Pfam domains (2) ---------OstA-2r1aH02 H:37-149 --------------- Pfam domains (2)
Pfam domains (3) ---------OstA-2r1aH03 H:37-149 --------------- Pfam domains (3)
Pfam domains (4) ---------OstA-2r1aH04 H:37-149 --------------- Pfam domains (4)
Pfam domains (5) ---------OstA-2r1aH05 H:37-149 --------------- Pfam domains (5)
Pfam domains (6) ---------OstA-2r1aH06 H:37-149 --------------- Pfam domains (6)
Pfam domains (7) ---------OstA-2r1aH07 H:37-149 --------------- Pfam domains (7)
Pfam domains (8) ---------OstA-2r1aH08 H:37-149 --------------- Pfam domains (8)
Sec.struct. author ..hhhhh.eeee....................eee..............------............eeee.....eeee.............eeee...........ee..eeeee....ee..........eeee Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r1a H 28 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTR------KEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL 164
37 47 57 67 |- | 87 97 107 117 127 137 147 157
76 83
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |