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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE HYDROLASE (2632844) FROM BACILLUS SUBTILIS AT 1.96 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 Aug 07  (Deposition) - 04 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  2632844, Putative Hydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Hydrolase (2632844) From Bacillus Subtilis At 1. 96 A Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CARBOXYLESTERASE NP
    ChainsA, B, C, D
    EC Number3.1.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 1-294
    Gene2632844, NAP, BSU05440
    Organism ScientificBACILLUS SUBTILIS
    Organism Taxid1423
    Strain168
    SynonymCARBOXYLESTERASE NA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 41)

Asymmetric Unit (5, 41)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MG1Ligand/IonMAGNESIUM ION
4MSE36Mod. Amino AcidSELENOMETHIONINE
5PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (2, 19)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
5PGE-1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (3, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
5PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA B:294 , HOH B:316 , HOH B:318 , HOH B:333 , HOH B:376 , HOH B:389BINDING SITE FOR RESIDUE MG B 295
2AC2SOFTWAREARG A:290BINDING SITE FOR RESIDUE CL A 295
3AC3SOFTWAREGLU D:229 , HOH D:337 , HOH D:372BINDING SITE FOR RESIDUE EDO D 295
4AC4SOFTWAREGLY B:63 , ALA B:64BINDING SITE FOR RESIDUE EDO B 296
5AC5SOFTWAREALA C:64 , SER C:130 , LEU C:131 , ALA C:156 , PHE C:162 , PHE C:166 , HIS C:274 , HOH C:335 , HOH C:399 , HOH C:522BINDING SITE FOR RESIDUE PGE C 295

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R11)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Phe A:221 -Pro A:222
2Phe B:221 -Pro B:222
3Phe C:221 -Pro C:222
4Phe D:221 -Pro D:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R11)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R11)

(-) Exons   (0, 0)

(no "Exon" information available for 2R11)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:283
 aligned with NAP_BACSU | P96688 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:283
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
            NAP_BACSU    11 LSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSMEQPTYVNERVMRFFN 293
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2r11A00 A:11-293  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh......eeeee....eeeeeeee......eeeee.....hhhhhh.hhhhhhhhheeeee.........ee.....hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhhh..................hhhhhhh....eeeeee......hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r11 A  11 LSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTmWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHmIGLSLGGLHTmNFLLRmPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWmmNDQNVLHPIFVKQFKAGVmWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSmEQPTYVNERVmRFFN 293
                                    20        30        40        50        60        70        80        90       100       110       120     | 130      |140  |    150       160       170       180     ||190       200     | 210       220       230       240       250       260       270       280       290   
                                                                                      70-MSE                                                 126-MSE    137-MSE |                                        186-MSE             206-MSE                                                                 278-MSE    289-MSE
                                                                                                                                                              143-MSE                                     187-MSE                                                                                                      

Chain B from PDB  Type:PROTEIN  Length:287
 aligned with NAP_BACSU | P96688 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:287
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       
            NAP_BACSU     8 IPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSMEQPTYVNERVMRFFNA 294
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2r11B00 B:8-294  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh......eeeeeee..eeeeeeee......eeeee.....hhhhhh.hhhhhhhhheeeee.........ee.....hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhh...................hhhhhhh....eeeeee......hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r11 B   8 IPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTmWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHmIGLSLGGLHTmNFLLRmPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWmmNDQNVLHPIFVKQFKAGVmWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSmEQPTYVNERVmRFFNA 294
                                    17        27        37        47        57        67  |     77        87        97       107       117       127       137     | 147       157       167       177       187       197       207       217       227       237       247       257       267       277|      287 |     
                                                                                         70-MSE                                                 126-MSE    137-MSE |                                        186-MSE             206-MSE                                                                 278-MSE    289-MSE 
                                                                                                                                                                 143-MSE                                     187-MSE                                                                                                       

Chain C from PDB  Type:PROTEIN  Length:285
 aligned with NAP_BACSU | P96688 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:285
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289     
            NAP_BACSU    10 ELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSMEQPTYVNERVMRFFNA 294
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2r11C00 C:10-294  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh....eeeee....eeeeeeee......eeeee.....hhhhhh.hhhhhhhhheeeee.........ee.....hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhh..................hhhhhhh....eeeeee......hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r11 C  10 ELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTmWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHmIGLSLGGLHTmNFLLRmPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWmmNDQNVLHPIFVKQFKAGVmWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSmEQPTYVNERVmRFFNA 294
                                    19        29        39        49        59        69|       79        89        99       109       119      |129       139   |   149       159       169       179      |189       199      |209       219       229       239       249       259       269       279       289     
                                                                                       70-MSE                                                 126-MSE    137-MSE |                                        186-MSE             206-MSE                                                                 278-MSE    289-MSE 
                                                                                                                                                               143-MSE                                     187-MSE                                                                                                       

Chain D from PDB  Type:PROTEIN  Length:288
 aligned with NAP_BACSU | P96688 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:288
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286        
            NAP_BACSU     7 SIPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSMEQPTYVNERVMRFFNA 294
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2r11D00 D:7-294  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) ---------------------------------------------------Abhydrolase_6-2r11D01 D:58-287                                                                                                                                                                                                        ------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------Abhydrolase_6-2r11D02 D:58-287                                                                                                                                                                                                        ------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------Abhydrolase_6-2r11D03 D:58-287                                                                                                                                                                                                        ------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------Abhydrolase_6-2r11D04 D:58-287                                                                                                                                                                                                        ------- Pfam domains (4)
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee......eeeee.....hhhhhh.hhhhhh...eeeee.........ee.....hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhhh..................hhhhhhh....eeeeee......hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2r11 D   7 SIPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTmWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHmIGLSLGGLHTmNFLLRmPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWmmNDQNVLHPIFVKQFKAGVmWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSmEQPTYVNERVmRFFNA 294
                                    16        26        36        46        56        66   |    76        86        96       106       116       126       136|     |146       156       166       176       186|      196       206       216       226       236       246       256       266       276 |     286  |     
                                                                                          70-MSE                                                 126-MSE    137-MSE |                                        186-MSE             206-MSE                                                                 278-MSE    289-MSE 
                                                                                                                                                                  143-MSE                                     187-MSE                                                                                                       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R11)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (NAP_BACSU | P96688)
molecular function
    GO:0052689    carboxylic ester hydrolase activity    Catalysis of the hydrolysis of a carboxylic ester bond.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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