2QZI - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF A CONSERVED PROTEIN OF UNKNOWN FUNCTION FROM STREPTOCOCCUS THERMOPHILUS LMG 18311.

Authors :   K. Tan, M. Zhou, L. Freeman, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)

Date :   16 Aug 07 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Apc86636, Streptococcus Thermophilus Lmg 18311, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, M. Zhou, L. Freeman, A. Joachimiak
The Crystal Structure Of A Conserved Protein Of Unknown Function From Streptococcus Thermophilus Lmg 18311.
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN
	Atcc	:	BAA-250
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	STU0600
	Organism Scientific	:	STREPTOCOCCUS THERMOPHILUS
	Organism Taxid	:	264199
	Strain	:	LMG 18311

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 15)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	NA	7	Ligand/Ion	SODIUM ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU C:18 , THR C:21 , ALA C:23 , HOH C:136	BINDING SITE FOR RESIDUE NA C 101
2	AC2	SOFTWARE	THR C:39 , GLN C:40 , ALA C:41 , HIS C:44 , GLU C:46 , HOH C:139	BINDING SITE FOR RESIDUE NA C 102
3	AC3	SOFTWARE	LEU B:18 , THR B:21 , ALA B:23 , HOH B:169	BINDING SITE FOR RESIDUE NA B 101
4	AC4	SOFTWARE	LEU A:18 , THR A:21 , ALA A:23 , HOH A:144	BINDING SITE FOR RESIDUE NA A 101
5	AC5	SOFTWARE	THR A:39 , GLN A:40 , ALA A:41 , HIS A:44 , GLU A:46 , HOH A:152	BINDING SITE FOR RESIDUE NA A 102
6	AC6	SOFTWARE	THR B:39 , GLN B:40 , ALA B:41 , HIS B:44 , GLU B:46 , HOH B:153	BINDING SITE FOR RESIDUE NA B 102
7	AC7	SOFTWARE	ARG B:84 , VAL B:86 , GLU B:93 , SER B:95 , HOH B:156	BINDING SITE FOR RESIDUE NA B 103
8	AC8	SOFTWARE	ASP A:81 , LYS A:82 , HOH A:103 , THR B:88 , ASP B:89 , LYS B:90	BINDING SITE FOR RESIDUE EDO B 104

(no "SS Bond" information available for 2QZI)

(no "Cis Peptide Bond" information available for 2QZI)

(no "SAP(SNP)/Variant" information available for 2QZI)

(no "PROSITE Motif" information available for 2QZI)

(no "Exon" information available for 2QZI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:101
 aligned with Q5M594_STRT2 | Q5M594 from UniProtKB/TrEMBL  Length:100

    Alignment length:101
                             1                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99 
         Q5M594_STRT2     - -MKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLMDKLRTVHTDKLIEISFPTTV 100
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qziA00 A:0-100 Streptococcus thermophilus LMG 18311 protein like                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhhhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee......hhhhhhhhhhhhhhhh.hhhhh.....eeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2qzi A   0 AmKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLmDKLRTVHTDKLIEISFPTTV 100
                             |       9        19        29        39        49        59        69        79|       89        99 
                             |                                                                             80-MSE                
                             1-MSE

Chain B from PDB  Type:PROTEIN  Length:101
 aligned with Q5M594_STRT2 | Q5M594 from UniProtKB/TrEMBL  Length:100

    Alignment length:101
                             1                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99 
         Q5M594_STRT2     - -MKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLMDKLRTVHTDKLIEISFPTTV 100
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qziB00 B:0-100 Streptococcus thermophilus LMG 18311 protein like                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee......hhhhhhhhhhhhhhhh......hhhhheeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2qzi B   0 AmKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLmDKLRTVHTDKLIEISFPTTV 100
                             |       9        19        29        39        49        59        69        79|       89        99 
                             1-MSE                                                                         80-MSE

Chain C from PDB  Type:PROTEIN  Length:101
 aligned with Q5M594_STRT2 | Q5M594 from UniProtKB/TrEMBL  Length:100

    Alignment length:101
                             1                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99 
         Q5M594_STRT2     - -MKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLMDKLRTVHTDKLIEISFPTTV 100
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qziC00 C:0-100 Streptococcus thermophilus LMG 18311 protein like                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhhhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee......hhhhhhhhhhhhhhhh.hhhhh.....eeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2qzi C   0 AmKLINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLmDKLRTVHTDKLIEISFPTTV 100
                             |       9        19        29        39        49        59        69        79|       89        99 
                             1-MSE                                                                         80-MSE

Chain D from PDB  Type:PROTEIN  Length:98
 aligned with Q5M594_STRT2 | Q5M594 from UniProtKB/TrEMBL  Length:100

    Alignment length:98
                                    12        22        32        42        52        62        72        82        92        
         Q5M594_STRT2     3 LINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLMDKLRTVHTDKLIEISFPTTV 100
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qziD00 D:3-100 Streptococcus thermophilus LMG 18311 protein like                                  CATH domains
           Pfam domains (1) DUF1827-2qziD01 D:3-97                                                                         --- Pfam domains (1)
           Pfam domains (2) DUF1827-2qziD02 D:3-97                                                                         --- Pfam domains (2)
           Pfam domains (3) DUF1827-2qziD03 D:3-97                                                                         --- Pfam domains (3)
           Pfam domains (4) DUF1827-2qziD04 D:3-97                                                                         --- Pfam domains (4)
         Sec.struct. author .ee.....hhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeee........hhhhhhhhhhhh............eeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2qzi D   3 LINTTWTHQELVNNQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDKDIVLmDKLRTVHTDKLIEISFPTTV 100
                                    12        22        32        42        52        62        72       |82        92        
                                                                                                        80-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2QZI)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Streptococcus thermophilus LMG 18311 protein like (1)

Homologous Superfamily: Streptococcus thermophilus LMG 18311 protein like (1)

Streptococcus thermophilus lmg 18311. Organism_taxid: 264199. Strain:lmg 18311. (1)

1a	2qziA00	A:0-100
1b	2qziB00	B:0-100
1c	2qziC00	C:0-100
1d	2qziD00	D:3-100

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: DUF1827] (1)

Family: DUF1827 (1)

Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (1)

1a	DUF1827-2qziD01	D:3-97
1b	DUF1827-2qziD02	D:3-97
1c	DUF1827-2qziD03	D:3-97
1d	DUF1827-2qziD04	D:3-97

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Description

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Ligands, Modified Residues, Ions (3, 15)

Sites (8, 8)

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