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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE TENA-LIKE THIAMINASE (TENA-1, SSO2206) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Aug 07  (Deposition) - 11 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Heme Oxygenase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Tena-Like Thiaminase Ii (Np_343586. 1) From Sulfolobus Solfataricus At 1. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ACTIVATOR TENA-1
    Atcc: 35092
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_343586.1, TENA-1
    Organism Scientific: SULFOLOBUS SOLFATARICUS P2
    Organism Taxid: 273057
    Strain: P2, DSM 1617, JCM 11322

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2IMD2Ligand/IonIMIDAZOLE
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2IMD2Ligand/IonIMIDAZOLE
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 30)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2IMD4Ligand/IonIMIDAZOLE
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:47 , TYR A:50 , CYS A:136 , TYR A:140 , GLU A:198 , PHE A:201 , GOL A:215BINDING SITE FOR RESIDUE IMD A 214
2AC2SOFTWAREASP B:47 , TYR B:50 , CYS B:136 , TYR B:140 , GLU B:198 , PHE B:201 , GOL B:215BINDING SITE FOR RESIDUE IMD B 214
3AC3SOFTWAREASP A:47 , VAL A:51 , CYS A:136 , MSE A:137 , TYR A:140 , TYR A:162 , TYR A:167 , IMD A:214 , HOH A:425BINDING SITE FOR RESIDUE GOL A 215
4AC4SOFTWARETYR A:120 , TYR A:121 , LYS A:128 , HOH A:386BINDING SITE FOR RESIDUE GOL A 216
5AC5SOFTWAREPHE A:138 , SER A:141 , ILE A:142 , ASP A:145 , LYS A:168 , HOH A:423BINDING SITE FOR RESIDUE GOL A 217
6AC6SOFTWARESER A:98 , ARG A:99 , HOH A:280BINDING SITE FOR RESIDUE GOL A 218
7AC7SOFTWAREGLU A:25 , LYS A:29 , ASP A:32 , SER A:34BINDING SITE FOR RESIDUE GOL A 219
8AC8SOFTWAREASP B:47 , VAL B:51 , CYS B:136 , TYR B:162 , TYR B:167 , IMD B:214 , HOH B:281BINDING SITE FOR RESIDUE GOL B 215
9AC9SOFTWARETYR B:121 , LYS B:128 , HOH B:249 , HOH B:254 , HOH B:298BINDING SITE FOR RESIDUE GOL B 216

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QZC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QZC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QZC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QZC)

(-) Exons   (0, 0)

(no "Exon" information available for 2QZC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
 aligned with Q97WL0_SULSO | Q97WL0 from UniProtKB/TrEMBL  Length:213

    Alignment length:211
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
         Q97WL0_SULSO     3 IVGNVENLINGVGELWNKYVKHEFILKMRDGSLPLDIFRYYLIQDGKYVEDMLRALLIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFLVAWTPCMFGYSIVGDYVIDSPNEVYKTWASFYASTEYKKRIEAILYALDEVSITEDLLNIFINSVRFEIGFWDASLRKDPTVY 213
               SCOP domains d2qzca_ A: automated matches                                                                                                                                                                                        SCOP domains
               CATH domains 2qzcA00 A:3-213 Heme Oxygenase; Chain A                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..--hhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qzc A   3 IVGNVENLINGVGELWNKYVKHEFILKmRDGSLPLDIFRYYLIQDGKYVEDmLRALLIASSKGPIDKVTKILNLVFSS--KGLETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFLVAWTPCmFGYSIVGDYVIDSPNEVYKTWASFYASTEYKKRIEAILYALDEVSITEDLLNIFINSVRFEIGFWDASLRKDPTVY 213
                                    12        22       |32        42        52 |      62        72       | -|       92       102       112       122       132    |  142       152       162       172       182       192       202       212 
                                                      30-MSE                  54-MSE                    80 83                                                   137-MSE                                                                        


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with Q97WL0_SULSO | Q97WL0 from UniProtKB/TrEMBL  Length:213

    Alignment length:209
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204         
         Q97WL0_SULSO     5 GNVENLINGVGELWNKYVKHEFILKMRDGSLPLDIFRYYLIQDGKYVEDMLRALLIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFLVAWTPCMFGYSIVGDYVIDSPNEVYKTWASFYASTEYKKRIEAILYALDEVSITEDLLNIFINSVRFEIGFWDASLRKDPTVY 213
               SCOP domains d2qzcb_ B: automated matches                                                                                                                                                                                      SCOP domains
               CATH domains 2qzcB00 B:5-213 Heme Oxygenase; Chain A                                                                                                                                                                           CATH domains
           Pfam domains (1) -------TENA_THI-4-2qzcB01 B:12-208                                                                                                                                                                          ----- Pfam domains (1)
           Pfam domains (2) -------TENA_THI-4-2qzcB02 B:12-208                                                                                                                                                                          ----- Pfam domains (2)
         Sec.struct. author hhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..-----hhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qzc B   5 GNVENLINGVGELWNKYVKHEFILKmRDGSLPLDIFRYYLIQDGKYVEDmLRALLIASSKGPIDKVTKILNLVFSS-----ETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFLVAWTPCmFGYSIVGDYVIDSPNEVYKTWASFYASTEYKKRIEAILYALDEVSITEDLLNIFINSVRFEIGFWDASLRKDPTVY 213
                                    14        24     |  34        44        54        64        74     |   - |      94       104       114       124       134  |    144       154       164       174       184       194       204         
                                                    30-MSE                  54-MSE                    80    86                                                137-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: HO (49)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QZC)

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