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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A HOMOLOGUE OF TELLURIDE RESISTANCE PROTEIN (TERD), SCO6318 FROM STREPTOMYCES COELICOLOR A3(2)
 
Authors :  K. Tan, X. Xu, Z. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  16 Aug 07  (Deposition) - 28 Aug 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Apc7352, Homologue Of Telluride Resistance Protein (Terd), Sco6318, Streptomyces Coelicolor A3(2), Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, X. Xu, Z. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of A Homologue Of Telluride Resistanc Protein (Terd), Sco6318 From Streptomyces Coelicolor A3(2).
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN SCO6318
    Atcc: BAA-471
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SCO6318, SCIF3.20C
    Organism Scientific: STREPTOMYCES COELICOLOR A3(2)
    Organism Taxid: 100226
    Strain: A3(2), M145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NA7Ligand/IonSODIUM ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:30 , GLY A:82 , GLY A:84 , ARG A:167 , HOH A:207 , HOH A:217BINDING SITE FOR RESIDUE NA A 193
2AC2SOFTWARETRP B:30 , GLY B:82 , GLY B:84 , HOH B:243 , HOH B:246BINDING SITE FOR RESIDUE NA B 193
3AC3SOFTWAREHIS A:41 , LEU A:42 , ASP A:43 , SER A:79 , GLU A:89 , HOH A:250BINDING SITE FOR RESIDUE NA A 194
4AC4SOFTWARELEU B:42 , ASP B:43 , SER B:79 , GLU B:89 , HOH B:239BINDING SITE FOR RESIDUE NA B 194
5AC5SOFTWAREPHE A:120 , VAL A:123 , THR A:126 , HOH A:253BINDING SITE FOR RESIDUE NA A 195
6AC6SOFTWAREPHE B:120 , ASP B:121 , VAL B:123 , THR B:126 , HOH B:238 , HOH B:244BINDING SITE FOR RESIDUE NA B 195
7AC7SOFTWARESER B:33 , PRO B:34 , ARG B:37 , HOH B:201BINDING SITE FOR RESIDUE NA B 196
8AC8SOFTWAREHIS A:112 , GLN A:113 , ASP A:114 , ASP A:176 , PRO A:177BINDING SITE FOR RESIDUE EDO A 196
9AC9SOFTWAREHIS A:78 , SER A:79 , GLN A:83 , GLY A:84 , HOH A:204BINDING SITE FOR RESIDUE EDO A 197

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QZ7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala B:187 -Pro B:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QZ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QZ7)

(-) Exons   (0, 0)

(no "Exon" information available for 2QZ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with Q93RS6_STRCO | Q93RS6 from UniProtKB/TrEMBL  Length:190

    Alignment length:172
                                                                                                                                                                                                    190 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189| 
         Q93RS6_STRCO    20 GLKRVDVRLKWDPSPWDRPPHHLDIIATTYAADAPHGRPVYVVQFDKRSPDGTINMSRHSRTGQGFGFVEEMTFELDRLSPSIARVIVGVAIHQDNGHKTFDDVSNTGVVVAEGYRELLTDGFERVAGATAATVAEFTRNASGAWEFREAVRGFDSDPVLFATEMGSAPRP-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qz7A01 A:20-183 sav2460 like domains                                                                                                                               -------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee............eeeeeeeee.........eee..........eeeee...........eeeee.hhhh...eeeeeeeeee.......hhhhh...eeeeee..eeeeee.hhhhh...eeeeeeeee.....eeeeeeeeee..hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qz7 A  20 GLKRVDVRLKWDPSPWDRPPHHLDIIATTYAADAPHGRPVYVVQFDKRSPDGTINmSRHSRTGQGFGFVEEmTFELDRLSPSIARVIVGVAIHQDNGHKTFDDVSNTGVVVAEGYRELLTDGFERVAGATAATVAEFTRNASGAWEFREAVRGFDSDPVLFATEmGSAPRPG 191
                                    29        39        49        59        69     |  79        89 |      99       109       119       129       139       149       159       169       179    |  189  
                                                                                  75-MSE          91-MSE                                                                                      184-MSE   


Chain B from PDB  Type:PROTEIN  Length:169
 aligned with Q93RS6_STRCO | Q93RS6 from UniProtKB/TrEMBL  Length:190

    Alignment length:169
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179         
         Q93RS6_STRCO    20 GLKRVDVRLKWDPSPWDRPPHHLDIIATTYAADAPHGRPVYVVQFDKRSPDGTINMSRHSRTGQGFGFVEEMTFELDRLSPSIARVIVGVAIHQDNGHKTFDDVSNTGVVVAEGYRELLTDGFERVAGATAATVAEFTRNASGAWEFREAVRGFDSDPVLFATEMGSAP 188
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qz7B01 B:20-183 sav2460 like domains                                                                                                                               ----- CATH domains
           Pfam domains (1) ----------------------------------------TerD-2qz7B01 B:60-178                                                                                                  ---------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------TerD-2qz7B02 B:60-178                                                                                                  ---------- Pfam domains (2)
         Sec.struct. author ...eeeeeee............eeeeeeeee.........eee..........eeeee...........eeeeee.hhh...eeeeeeeeee.......hhhhh...eeeeee..eeeeee.hhhhh...eeeeeeeee.....eeeeeeeeee..hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qz7 B  20 GLKRVDVRLKWDPSPWDRPPHHLDIIATTYAADAPHGRPVYVVQFDKRSPDGTINmSRHSRTGQGFGFVEEmTFELDRLSPSIARVIVGVAIHQDNGHKTFDDVSNTGVVVAEGYRELLTDGFERVAGATAATVAEFTRNASGAWEFREAVRGFDSDPVLFATEmGSAP 188
                                    29        39        49        59        69     |  79        89 |      99       109       119       129       139       149       159       169       179    |    
                                                                                  75-MSE          91-MSE                                                                                      184-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QZ7)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: vWA-like (60)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q93RS6_STRCO | Q93RS6)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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