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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN FROM METHANOPYRUS KANDLERI
 
Authors :  J. B. Bonanno, A. Zhang, K. T. Bain, J. Adams, S. Ozyurt, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  14 Aug 07  (Deposition) - 28 Aug 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, A. Zhang, K. T. Bain, J. Adams, S. Ozyurt, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of An Uncharacterized Conserved Protein From Methanopyrus Kandleri.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED CONSERVED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Gene: MK0968
    Mutation: YES
    Organism Scientific: METHANOPYRUS KANDLERI AV19
    Organism Taxid: 190192
    Strain: AV19, DSM 6324, JCM 9639, NBRC 100938

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2QYA)

(-) Sites  (0, 0)

(no "Site" information available for 2QYA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QYA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QYA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QYA)

(-) Exons   (0, 0)

(no "Exon" information available for 2QYA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with Q8TWR4_METKA | Q8TWR4 from UniProtKB/TrEMBL  Length:114

    Alignment length:115
                                                                                                                                          114  
                                    11        21        31        41        51        61        71        81        91       101       111  |  
         Q8TWR4_METKA     2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSLEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQIYILPREPFL--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qyaA01 A:2-108 uncharacterized conserved protein from methanopyrus kandleri domain like                   -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeee.hhh..eeee..eeee........eeehhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhh...hhhhhee....eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2qya A   2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSMEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQMYILPREPFLEG 116
                                    11        21        31        41        51        61        71        81        91       101       111     


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with Q8TWR4_METKA | Q8TWR4 from UniProtKB/TrEMBL  Length:114

    Alignment length:115
                                                                                                                                          114  
                                    11        21        31        41        51        61        71        81        91       101       111  |  
         Q8TWR4_METKA     2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSLEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQIYILPREPFL--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qyaB01 B:2-108 uncharacterized conserved protein from methanopyrus kandleri domain like                   -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeee.hhh..eeee..eeee.hhhhhh.eeehhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhh........eee..eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2qya B   2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSMEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQMYILPREPFLEG 116
                                    11        21        31        41        51        61        71        81        91       101       111     


Chain C from PDB  Type:PROTEIN  Length:115
 aligned with Q8TWR4_METKA | Q8TWR4 from UniProtKB/TrEMBL  Length:114

    Alignment length:115
                                                                                                                                          114  
                                    11        21        31        41        51        61        71        81        91       101       111  |  
         Q8TWR4_METKA     2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSLEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQIYILPREPFL--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qyaC01 C:2-108 uncharacterized conserved protein from methanopyrus kandleri domain like                   -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeee.hhh..eeee..eeee.hhhhhh.eeehhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhh...hhhhheee..eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2qya C   2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSMEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQMYILPREPFLEG 116
                                    11        21        31        41        51        61        71        81        91       101       111     


Chain D from PDB  Type:PROTEIN  Length:115
 aligned with Q8TWR4_METKA | Q8TWR4 from UniProtKB/TrEMBL  Length:114

    Alignment length:115
                                                                                                                                          114  
                                    11        21        31        41        51        61        71        81        91       101       111  |  
         Q8TWR4_METKA     2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSLEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQIYILPREPFL--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qyaD01 D:2-108 uncharacterized conserved protein from methanopyrus kandleri domain like                   -------- CATH domains
           Pfam domains (1) -------DUF424-2qyaD01 D:9-108                                                                              -------- Pfam domains (1)
           Pfam domains (2) -------DUF424-2qyaD02 D:9-108                                                                              -------- Pfam domains (2)
           Pfam domains (3) -------DUF424-2qyaD03 D:9-108                                                                              -------- Pfam domains (3)
           Pfam domains (4) -------DUF424-2qyaD04 D:9-108                                                                              -------- Pfam domains (4)
         Sec.struct. author ..eeeeeeee..eeeeeeee.hhh..eeee..eeee.hhhhhh.eeehhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhh...hhhhheee..eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2qya D   2 ARVLLNIHGTGDTVVLALCDEDLLGVELKYKGRTLHISEPFYSGKSMEPDRAAKKIREAVQEYEDEKTVAINALGELACSVVVDAGLAREDEIGELGGVPHVQMYILPREPFLEG 116
                                    11        21        31        41        51        61        71        81        91       101       111
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QYA)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF424] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QYA)

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