Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF MULTIPLE ANTIBIOTIC-RESISTANCE REPRESSOR (MARR) (YP_013417.1) FROM LISTERIA MONOCYTOGENES 4B F2365 AT 2.07 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  10 Aug 07  (Deposition) - 21 Aug 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Yp_013417. 1, Multiple Antibiotic-Resistance Repressor (Marr), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Dna-Binding, Transcription, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Multiple Antibiotic-Resistance Repressor (Marr) (Yp_013417. 1) From Listeria Monocytogenes 4B F2365 At 2. 07 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, MARR FAMILY
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_013417.1, LMOF2365_0814
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B
    Organism Taxid: 265669
    Strain: F2365

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 39)

Asymmetric Unit (1, 39)
No.NameCountTypeFull Name
1MSE39Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2QWW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QWW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QWW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QWW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QWW)

(-) Exons   (0, 0)

(no "Exon" information available for 2QWW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwA00 A:5-152 'winged helix' repressor DNA binding domain                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eee..........eeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww A   5 NTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKPNDSmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKKS 152
                                    14        24        34        44|       54        64        74        84    ||  96       106       116  |   |126       136       146      
                                                                   45-MSE                                      89|   |                    119-MSE|                            
                                                                                                                92   |                        123-MSE                         
                                                                                                                    96-MSE                     124-MSE                        


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qwwB00 B:3-151 'winged helix' repressor DNA binding domain                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eee.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qww B   3 GINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    12        22        32        42  |     52        62        72        82       |97       107       117 |   ||127       137       147    
                                                                     45-MSE                                       90|                    119-MSE|                           
                                                                                                                   96-MSE                    123-MSE                        
                                                                                                                                              124-MSE                       


Chain C from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qwwC00 C:6-151 'winged helix' repressor DNA binding domain                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhh..hhhhhhhhhhhhhhh..eee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qww C   6 TDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    15        25        35        45        55        65        75        85  ||   103       113     | 123|      133       143        
                                                                  45-MSE                                     88|                   119-MSE|                           
                                                                                                              97                       123-MSE                        
                                                                                                                                        124-MSE                       


Chain D from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwD00 D:6-152 'winged helix' repressor DNA binding domain                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww D   6 TDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKKS 152
                                    15        25        35        45        55        65        75        85 ||    103       113     | 123|      133       143         
                                                                  45-MSE                                    87|                    119-MSE|                            
                                                                                                             96-MSE                    123-MSE                         
                                                                                                                                        124-MSE                        


Chain E from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwE00 E:3-151 'winged helix' repressor DNA binding domain                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...eehhhhhhhhh.hhhhhhhhhhhhhhh..eee......eeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww E   3 GINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNSmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    12        22        32        42  |     52        62        72        82     |||98       108       118|   || 128       138       148   
                                                                     45-MSE                                     88||                    119-MSE|                           
                                                                                                                 95|                        123-MSE                        
                                                                                                                  96-MSE                     124-MSE                       


Chain F from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwF00 F:6-151 'winged helix' repressor DNA binding domain                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeeehhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww F   6 TDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    15        25        35        45        55        65        75        85  ||   102       112      |122||     132       142         
                                                                  45-MSE                                     88|                    119-MSE|                           
                                                                                                              96-MSE                    123-MSE                        
                                                                                                                                         124-MSE                       


Chain G from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwG00 G:5-151 'winged helix' repressor DNA binding domain                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...eehhhhhhhhh...hhhhhhhhhhhhh..eee.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww G   5 NTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLSmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    14        24        34        44|       54        64        74        84  |||  101       111       121 ||    131       141       151
                                                                   45-MSE                                    87||                    119-MSE|                           
                                                                                                              95|                        123-MSE                        
                                                                                                               96-MSE                     124-MSE                       


Chain H from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qwwH00 H:2-151 'winged helix' repressor DNA binding domain                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qww H   2 VGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAmINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNmDLTLKLSKKGEDLSKRSTANAFmYKAmmKVFENLTENEIEELIRLNKKVETLLKK 151
                                    11        21        31        41   |    51        61        71        81      ||98       108       118|   || 128       138       148   
                                                                      45-MSE                                     88|                    119-MSE|                           
                                                                                                                  96-MSE                    123-MSE                        
                                                                                                                                             124-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QWW)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2QWW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QWW)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 2qww)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2qww)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2qww
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2QWW)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QWW)