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(-) Description

Title :  CARBOXYSOME SUBUNIT, CCML
 
Authors :  S. Tanaka, M. R. Sawaya, C. A. Kerfeld, T. O. Yeates
Date :  09 Aug 07  (Deposition) - 04 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Pentamer, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Tanaka, C. A. Kerfeld, M. R. Sawaya, F. Cai, S. Heinhorst, G. C. Cannon, T. O. Yeates
Atomic-Level Models Of The Bacterial Carboxysome Shell.
Science V. 319 1083 2008
PubMed-ID: 18292340  |  Reference-DOI: 10.1126/SCIENCE.1151458

(-) Compounds

Molecule 1 - CARBON DIOXIDE CONCENTRATING MECHANISM PROTEIN CCML
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CCML
    Organism Scientific: SYNECHOCYSTIS SP.
    Organism Taxid: 1148
    Strain: PCC 6803

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:61 , SER B:61 , SER C:61 , SER D:61 , SER E:61BINDING SITE FOR RESIDUE GOL B 200
2AC2SOFTWARESER F:61 , SER G:61 , SER H:61 , SER I:61 , SER J:61BINDING SITE FOR RESIDUE GOL G 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QW7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QW7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QW7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QW7)

(-) Exons   (0, 0)

(no "Exon" information available for 2QW7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7a1 A:1-96 Carbon dioxide concentrating mechanism protein CcmL                               SCOP domains
               CATH domains 2qw7A00 A:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeeeeeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 A  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7b_ B: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7B00 B:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 B  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain C from PDB  Type:PROTEIN  Length:95
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:95
                                    10        20        30        40        50        60        70        80        90     
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNK 95
               SCOP domains d2qw7c_ C: Carbon dioxide concentrating mechanism protein CcmL                                  SCOP domains
               CATH domains 2qw7C00 C:1-95 ethanolamine utilization protein eutn like                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  2qw7 C  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNK 95
                                    10        20        30        40        50        60        70        80        90     


Chain D from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7d_ D: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7D00 D:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 D  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain E from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7e_ E: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7E00 E:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 E  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain F from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7f_ F: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7F00 F:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 F  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain G from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7g_ G: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7G00 G:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee....hhhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeeeeeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 G  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain H from PDB  Type:PROTEIN  Length:98
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:98
                                    10        20        30        40        50        60        70        80        90        
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKRDD 98
               SCOP domains d2qw7h_ H: Carbon dioxide concentrating mechanism protein CcmL                                     SCOP domains
               CATH domains 2qw7H00 H:1-98 ethanolamine utilization protein eutn like                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.hhhh..eeeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  2qw7 H  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKRDD 98
                                    10        20        30        40        50        60        70        80        90        


Chain I from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7i_ I: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7I00 I:1-96 ethanolamine utilization protein eutn like                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeee..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 I  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90      


Chain J from PDB  Type:PROTEIN  Length:96
 aligned with CCML_SYNY3 | P72759 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
            CCML_SYNY3    1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
               SCOP domains d2qw7j_ J: Carbon dioxide concentrating mechanism protein CcmL                                   SCOP domains
               CATH domains 2qw7J00 J:1-96 ethanolamine utilization protein eutn like                                        CATH domains
           Pfam domains (1) EutN_CcmL-2qw7J01 J:1-83                                                           ------------- Pfam domains (1)
           Pfam domains (2) EutN_CcmL-2qw7J02 J:1-83                                                           ------------- Pfam domains (2)
           Pfam domains (3) EutN_CcmL-2qw7J03 J:1-83                                                           ------------- Pfam domains (3)
           Pfam domains (4) EutN_CcmL-2qw7J04 J:1-83                                                           ------------- Pfam domains (4)
           Pfam domains (5) EutN_CcmL-2qw7J05 J:1-83                                                           ------------- Pfam domains (5)
           Pfam domains (6) EutN_CcmL-2qw7J06 J:1-83                                                           ------------- Pfam domains (6)
           Pfam domains (7) EutN_CcmL-2qw7J07 J:1-83                                                           ------------- Pfam domains (7)
           Pfam domains (8) EutN_CcmL-2qw7J08 J:1-83                                                           ------------- Pfam domains (8)
           Pfam domains (9) EutN_CcmL-2qw7J09 J:1-83                                                           ------------- Pfam domains (9)
          Pfam domains (10) EutN_CcmL-2qw7J10 J:1-83                                                           ------------- Pfam domains (10)
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhh..........eeeeeeeeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2qw7 J  1 MQLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPLDAMVVGIIDTVNVASGSLYNKR 96
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: OB (224)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QW7)

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  2qw7
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  CCML_SYNY3 | P72759
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2qyr 2qzm