2QSJ - JenaLib

Title :   CRYSTAL STRUCTURE OF A LUXR FAMILY DNA-BINDING RESPONSE REGULATOR FROM SILICIBACTER POMEROYI

Authors :   J. B. Bonanno, J. Freeman, K. T. Bain, M. Mendoza, R. Romero, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   31 Jul 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)

Keywords :   Structural Genomics, Dna Binding, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Dna-Binding, Transcription, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. B. Bonanno, J. Freeman, K. T. Bain, M. Mendoza, R. Romero, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A Luxr Family Dna-Binding Response Regulator From Silicibacter Pomeroyi.
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Q5LQW4_RUEPO | Q5LQW4 from UniProtKB/TrEMBL  Length:220

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
         Q5LQW4_RUEPO     1 MTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPRSYL 131
               SCOP domains d2qsja_ A: automated matches                                                                                                        SCOP domains
               CATH domains 2qsjA00 A:1-131  [code=3.40.50.2300, no name defined]                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh.....eeeee.------hhhhhhhhhhhh...eeeee-----hhhhhhhhhh..........hhhhhhhhhhhhhh.....hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qsj A   1 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDV------AIDGLVRLKRFDPSNAVALI-----HELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPRSYL 131
                                    10        20        30        40        50     |   -  |     70        80 |     |90       100       110       120       130 
                                                                                  56     63                 82    88

Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q5LQW4_RUEPO | Q5LQW4 from UniProtKB/TrEMBL  Length:220

    Alignment length:130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
         Q5LQW4_RUEPO     1 MTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPRSY 130
               SCOP domains d2qsjb_ B: automated matches                                                                                                       SCOP domains
               CATH domains 2qsjB00 B:1-130  [code=3.40.50.2300, no name defined]                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh.....eeeeee------hhhhhhhhhhhh...eeeeee..--hhhhhhhhhh....eee...hhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qsj B   1 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDV------AIDGLVRLKRFDPSNAVALISGE--HELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPRSY 130
                                    10        20        30        40        50     |   -  |     70        80    |  |90       100       110       120       130
                                                                                  56     63                    85 88

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5LQW4_RUEPO | Q5LQW4)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
	GO:0000160	phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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		Biological Unit 3	[ Jena3D ]

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