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(-) Description

Title :  STRUCTURE OF THE OCTAMERIC PENICILLIN-BINDING PROTEIN HOMOLOGUE FROM PYROCOCCUS ABYSSI
 
Authors :  V. Delfosse, E. Girard, L. Moulinier, P. Schultz, C. Mayer
Date :  16 Jul 07  (Deposition) - 22 Jul 08  (Release) - 16 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Pab87, Octamer, Lu-Hpdo3A, Pbp, Archaea, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Delfosse, E. Girard, C. Birck, M. Delmarcelle, M. Delarue, O. Poch, P. Schultz, C. Mayer
Structure Of The Archaeal Pab87 Peptidase Reveals A Novel Self-Compartmentalizing Protease Family
Plos One V. 4 E4712 2009
PubMed-ID: 19266066  |  Reference-DOI: 10.1371/JOURNAL.PONE.0004712
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PBP RELATED BETA-LACTAMASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29A
    Expression System Strain: BL21-DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PBP
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Strain: GE5
    Synonym: PENICILLIN-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric/Biological Unit (2, 21)
No.NameCountTypeFull Name
1DO34Ligand/Ion10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID
2LU17Ligand/IonLUTETIUM (III) ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:509 , HOH A:531 , HOH A:694 , HOH A:695 , HOH A:697 , HOH A:730BINDING SITE FOR RESIDUE LU A 448
02AC2SOFTWAREHOH B:708 , HOH B:709 , HOH B:712BINDING SITE FOR RESIDUE LU B 448
03AC3SOFTWAREHOH C:661 , HOH C:662 , HOH C:663 , HOH C:678 , HOH C:686BINDING SITE FOR RESIDUE LU C 448
04AC4SOFTWAREHOH G:800BINDING SITE FOR RESIDUE LU G 448
05AC5SOFTWAREHOH F:555 , HOH F:556 , HOH F:756 , HOH F:757 , HOH F:759 , HOH F:760BINDING SITE FOR RESIDUE LU F 449
06AC6SOFTWAREHOH B:703 , HOH B:705BINDING SITE FOR RESIDUE LU B 449
07AC7SOFTWAREHOH C:672 , HOH C:673 , HOH C:674 , HOH F:560BINDING SITE FOR RESIDUE LU C 449
08AC8SOFTWAREHOH D:657 , HOH D:659BINDING SITE FOR RESIDUE LU D 449
09AC9SOFTWAREHOH E:777 , HOH E:778BINDING SITE FOR RESIDUE LU E 449
10BC1SOFTWAREHOH G:528 , HOH H:518 , HOH H:724BINDING SITE FOR RESIDUE LU G 450
11BC2SOFTWAREASP E:81 , HIS E:102 , HOH E:745 , HOH E:747 , GLU H:297 , GLU H:318 , LYS H:319 , HOH H:638BINDING SITE FOR RESIDUE DO3 E 450
12BC3SOFTWAREGLU F:297 , GLU F:318 , LYS F:319 , HOH F:702 , ASP G:81 , HIS G:102 , HOH G:706 , HOH G:800BINDING SITE FOR RESIDUE DO3 G 451
13BC4SOFTWAREASP H:81 , HIS H:102 , TYR H:286BINDING SITE FOR RESIDUE DO3 H 449
14BC5SOFTWAREASP F:81 , HIS F:102 , HOH F:529BINDING SITE FOR RESIDUE DO3 F 451

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QMI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QMI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QMI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QMI)

(-) Exons   (0, 0)

(no "Exon" information available for 2QMI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:447
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhh...........hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeee....eeeeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeee...eeeeeeee..eeeeeeeeee..eeeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi A   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       


Chain B from PDB  Type:PROTEIN  Length:447
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhh.....eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeeehhh.eeeeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeee...eeeeeeee..eeeeeeeeee..eeeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi B   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       


Chain C from PDB  Type:PROTEIN  Length:446
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhh...........hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeee....eeeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeee..eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi C   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      


Chain D from PDB  Type:PROTEIN  Length:446
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeeee....ee......ee.hhhhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhh......eeee.....eeee............eehhhhhhhhhhhhhhh.....hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeeehhh.eeeeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeeeee....eeeeeeeee..eeeeee..eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi D   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      


Chain E from PDB  Type:PROTEIN  Length:446
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhh...........hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhhh.....hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeeehhh.eeeeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhheeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeeeee....eeeeeeee....eeeee..eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi E   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIK 446
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      


Chain F from PDB  Type:PROTEIN  Length:447
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeeee....ee......ee.hhhhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeee....eeeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeeeeee..eeeeeeeee....eeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi F   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       


Chain G from PDB  Type:PROTEIN  Length:447
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhh...........hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhhh..ee.........ee....eeeeee..eeeeeeeee....eeeeeeehhh.eeeeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..eeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeee........eeeeeee..eeeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi G   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       


Chain H from PDB  Type:PROTEIN  Length:447
 aligned with Q9V2D6_PYRAB | Q9V2D6 from UniProtKB/TrEMBL  Length:447

    Alignment length:447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       
         Q9V2D6_PYRAB     1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Beta-lactamase-2qmiH01 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH09 H:350-446                                                                      - Pfam domains (1)
           Pfam domains (2) -----Beta-lactamase-2qmiH02 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH10 H:350-446                                                                      - Pfam domains (2)
           Pfam domains (3) -----Beta-lactamase-2qmiH03 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH11 H:350-446                                                                      - Pfam domains (3)
           Pfam domains (4) -----Beta-lactamase-2qmiH04 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH12 H:350-446                                                                      - Pfam domains (4)
           Pfam domains (5) -----Beta-lactamase-2qmiH05 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH13 H:350-446                                                                      - Pfam domains (5)
           Pfam domains (6) -----Beta-lactamase-2qmiH06 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH14 H:350-446                                                                      - Pfam domains (6)
           Pfam domains (7) -----Beta-lactamase-2qmiH07 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH15 H:350-446                                                                      - Pfam domains (7)
           Pfam domains (8) -----Beta-lactamase-2qmiH08 H:6-348                                                                                                                                                                                                                                                                                                                         -Pab87_oct-2qmiH16 H:350-446                                                                      - Pfam domains (8)
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhh..hhhhhhh........hhhhhhhhhh..........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhh.......eeee.....eeee............eehhhhhhhhhhhhhh......hhhhhhhhh...ee.........ee....eeeeee..eeeeeeeee....eeeeeeehhh.eeeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhheeee.hhhh.eeeeeee..eeeeee.......eeeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmi H   1 MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGYPPSYIAMYALALLLGKNPEKELPFIYRERILKKVEGRYMGYKGTIKFEVKVDGDVVYLRALGRAFTYTIPLFPEVLEEDFIKCYTLSNGRKMYAEFYIKDNKVDLIFERYRLIKS 447
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440
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Clan: Beta-lactamase (210)
(-)
Clan: no clan defined [family: Pab87_oct] (1)

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