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(-) Description

Title :  CRYSTAL STRUCTURE OF BES PROTEIN FROM BACILLUS CEREUS
 
Authors :  Y. Kim, N. Maltseva, A. Zawadzka, D. Holzle, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  13 Jul 07  (Deposition) - 31 Jul 07  (Release) - 24 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Alpha-Beta Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, N. Maltseva, A. Zawadzka, D. Holzle, A. Joachimiak
Crystal Structure Of Bes From Bacillus Cereus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BES
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BC_3734
    Organism Scientific: BACILLUS CEREUS ATCC 14579
    Organism Taxid: 226900
    Strain: DSM 31

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO45Ligand/IonSULFATE ION
3SVY2Mod. Amino AcidO-[BIS(1-METHYLETHOXY)PHOSPHORYL]-L-SERINE
Biological Unit 1 (3, 11)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO45Ligand/IonSULFATE ION
3SVY2Mod. Amino AcidO-[BIS(1-METHYLETHOXY)PHOSPHORYL]-L-SERINE
Biological Unit 2 (3, 22)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2SO410Ligand/IonSULFATE ION
3SVY4Mod. Amino AcidO-[BIS(1-METHYLETHOXY)PHOSPHORYL]-L-SERINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE B:88 , GLU B:89 , GLY B:90 , HOH B:807BINDING SITE FOR RESIDUE SO4 B 601
2AC2SOFTWARELYS A:245 , LYS A:264 , ARG A:267 , HOH A:615 , HOH A:731 , HOH B:720BINDING SITE FOR RESIDUE SO4 A 602
3AC3SOFTWARELYS B:245 , LYS B:264 , ARG B:267 , HOH B:618 , HOH B:647BINDING SITE FOR RESIDUE SO4 B 603
4AC4SOFTWAREILE A:88 , GLU A:89 , GLY A:90 , HOH A:783 , HOH A:845BINDING SITE FOR RESIDUE SO4 A 604
5AC5SOFTWARETRP B:185 , GLU B:219 , ARG B:220 , HIS B:222 , MSE B:223 , HIS B:254 , HOH B:733BINDING SITE FOR RESIDUE SO4 B 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QM0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QM0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QM0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QM0)

(-) Exons   (0, 0)

(no "Exon" information available for 2QM0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q81A57_BACCR | Q81A57 from UniProtKB/TrEMBL  Length:272

    Alignment length:271
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271 
         Q81A57_BACCR     2 NTTVEKQQIITSNTEQWKMYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHSLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSKGLRFISYV 272
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------2qm0A01 A:14-272  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee......eeeeeee......eeeeeee..........eeeeeeehhhhhhhhhhhhhhhhh.hhhhhh....eeeeee.......hhhhhhhhhh......---------......hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeeee......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qm0 A   2 NTTVEKQQIITSNTEQWKmYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISK---------PWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHsLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREHmVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSKGLRFISYV 272
                                    11        21        31        41        51        61        71        81        91       101      |  -      |121       131       141       151     | 161       171       181       191       201       211       221 |     231       241       251       261       271 
                                             20-MSE                                                                                 108       118                                    157-SVY                                                           223-MSE                                             


Chain B from PDB  Type:PROTEIN  Length:268
 aligned with Q81A57_BACCR | Q81A57 from UniProtKB/TrEMBL  Length:272

    Alignment length:268
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264        
         Q81A57_BACCR     5 VEKQQIITSNTEQWKMYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHSLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSKGLRFISYV 272
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------2qm0B01 B:14-272  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                              CATH domains
           Pfam domains (1) -----------------Esterase-2qm0B01 B:22-261                                                                                                                                                                                                                       ----------- Pfam domains (1)
           Pfam domains (2) -----------------Esterase-2qm0B02 B:22-261                                                                                                                                                                                                                       ----------- Pfam domains (2)
         Sec.struct. author .eee......eeeeeee......eeeeeee..........eeeeeeehhhhhhhhhhhhhhhhh.hhhhhh....eeeeee........hhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeeee......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qm0 B   5 VEKQQIITSNTEQWKmYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHsLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREHmVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSKGLRFISYV 272
                                    14     |  24        34        44        54        64        74        84        94       104       114       124       134       144       154  |    164       174       184       194       204       214       224       234       244       254       264        
                                          20-MSE                                                                                                                                  157-SVY                                                           223-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QM0)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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