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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE OF THE ALPHA/BETA SUPERFAMILY (XCC1541) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.35 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Jul 07  (Deposition) - 24 Jul 07  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Putative Hydrolase Of The Alpha/Beta Superfamily, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Protein Xcc1541 (Np_636912. 1) From Xanthomonas Campestris At 1. 35 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN XCC1541
    Atcc: 33913
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_636912.1, XCC1541
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
    Organism Taxid: 340
    Strain: NCPPB 528, LMG 568

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 25)

Asymmetric Unit (5, 25)
No.NameCountTypeFull Name
1CL8Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
4PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
5TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3P6G-1Ligand/IonHEXAETHYLENE GLYCOL
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE5Mod. Amino AcidSELENOMETHIONINE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5TLA-1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY B:11 , SER B:14 , ALA B:18BINDING SITE FOR RESIDUE CL B 176
02AC2SOFTWAREARG B:3 , TRP B:33 , GLN B:173BINDING SITE FOR RESIDUE CL B 177
03AC3SOFTWAREHIS A:35 , GLU A:36 , ARG A:37 , HOH A:367BINDING SITE FOR RESIDUE CL A 176
04AC4SOFTWAREARG B:47 , GLY B:50BINDING SITE FOR RESIDUE CL B 178
05AC5SOFTWAREARG A:147 , HOH A:184 , VAL B:151 , ASP B:152 , HIS B:160BINDING SITE FOR RESIDUE CL A 177
06AC6SOFTWAREARG C:147 , HOH C:185 , VAL D:151 , ASP D:152 , HIS D:160BINDING SITE FOR RESIDUE CL C 176
07AC7SOFTWAREVAL A:151 , ASP A:152 , HIS A:160 , HOH A:352 , ARG B:147 , HOH B:192BINDING SITE FOR RESIDUE CL A 178
08AC8SOFTWAREVAL C:151 , ASP C:152 , ARG D:147 , HOH D:189BINDING SITE FOR RESIDUE CL C 177
09AC9SOFTWAREGLY B:11 , PHE B:12 , SER B:14 , LYS B:20 , SER B:81 , HIS B:155 , ARG B:156 , PEG B:180 , HOH B:197 , HOH B:207 , HOH B:222 , ARG C:67 , GLN C:93 , PRO C:95BINDING SITE FOR RESIDUE TLA B 179
10BC1SOFTWAREASP C:152 , ASP C:153 , GLY C:154 , HOH C:267 , HOH C:318BINDING SITE FOR RESIDUE P6G C 178
11BC2SOFTWAREPRO C:120 , ILE C:121 , ARG C:147 , HOH C:186 , HOH C:262 , HOH C:287 , HOH D:249BINDING SITE FOR RESIDUE PEG C 179
12BC3SOFTWARESER B:81 , TLA B:179 , HOH B:268BINDING SITE FOR RESIDUE PEG B 180
13BC4SOFTWAREARG B:3 , HOH B:309 , LYS C:107 , GLY C:109 , HOH C:205BINDING SITE FOR RESIDUE PEG C 180
14BC5SOFTWAREASP D:39 , ASP D:42BINDING SITE FOR RESIDUE PEG D 176

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QJW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QJW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QJW)

(-) Exons   (0, 0)

(no "Exon" information available for 2QJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
 aligned with Q8PAE4_XANCP | Q8PAE4 from UniProtKB/TrEMBL  Length:175

    Alignment length:176
                             1                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169      
         Q8PAE4_XANCP     - -MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qjwA00 A:0-175  [code=3.40.50.1820, no name defined]                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee........hhhhhhhhhhhhhh..eee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhh.....eeeee..................eeeeee......hhhhhhhhhhhhh.eeeee........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjw A   0 GmSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLmVPPTKmGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
                             |       9        19        29        39        49        59        69        79        89        99  |    109       119       129       139       149       159       169      
                             |                                                                                                  102-MSE |                                                                   
                             1-MSE                                                                                                    108-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:176
 aligned with Q8PAE4_XANCP | Q8PAE4 from UniProtKB/TrEMBL  Length:175

    Alignment length:176
                             1                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169      
         Q8PAE4_XANCP     - -MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qjwB00 B:0-175  [code=3.40.50.1820, no name defined]                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee........hhhhhhhhhhhhhhh.eee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhh...eeeeeee..................eeeeee......hhhhhhhhhhhh..eeeee........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjw B   0 GmSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLmVPPTKmGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
                             |       9        19        29        39        49        59        69        79        89        99  |    109       119       129       139       149       159       169      
                             1-MSE                                                                                              102-MSE |                                                                   
                                                                                                                                      108-MSE                                                               


Chain C from PDB  Type:PROTEIN  Length:173
 aligned with Q8PAE4_XANCP | Q8PAE4 from UniProtKB/TrEMBL  Length:175

    Alignment length:173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   
         Q8PAE4_XANCP     3 RGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qjwC00 C:3-175  [code=3.40.50.1820, no name defined]                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhh..eee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhh......eeeee..................eeeeee......hhhhhhhhhhhh..eeeee........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjw C   3 RGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLmVPPTKmGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
                                    12        22        32        42        52        62        72        82        92       102     | 112       122       132       142       152       162       172   
                                                                                                                             102-MSE |                                                                   
                                                                                                                                   108-MSE                                                               


Chain D from PDB  Type:PROTEIN  Length:172
 aligned with Q8PAE4_XANCP | Q8PAE4 from UniProtKB/TrEMBL  Length:175

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
         Q8PAE4_XANCP     1 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2qjwD00 D:2-175  [code=3.40.50.1820, no name defined]                                                                                                                          CATH domains
           Pfam domains (1) ----Abhydrolase_5-2qjwD01 D:5-155                                                                                                                          -------------------- Pfam domains (1)
           Pfam domains (2) ----Abhydrolase_5-2qjwD02 D:5-155                                                                                                                          -------------------- Pfam domains (2)
           Pfam domains (3) ----Abhydrolase_5-2qjwD03 D:5-155                                                                                                                          -------------------- Pfam domains (3)
           Pfam domains (4) ----Abhydrolase_5-2qjwD04 D:5-155                                                                                                                          -------------------- Pfam domains (4)
         Sec.struct. author ....eeeee........hhhhhhhhhhhhhhh.eee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhh.---.eeeeehhhhhhhhhhhh.....eeeee..................eeeeee......hhhhhhhhhhhh..eeeee........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjw D   1 mSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAATE---VVLAGSSLGSYIAAQVSLQVPTRALFLmVPPTKmGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAHVQAASRAFAELLQSL 175
                            |       10        20        30        40        50        60        70|   |   80        90       100 |     110       120       130       140       150       160       170     
                            1-MSE                                                                71  75                        102-MSE |                                                                   
                                                                                                                                     108-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QJW)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QJW)

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