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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTOKINASE (NP_810670.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  02 Jul 07  (Deposition) - 10 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Np_810670. 1, Fructokinase, Pfkb Family Carbohydrate Kinase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Fructokinase (Np_810670. 1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOKINASE
    Atcc: 29148
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_810670.1, BT_1757
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186
    Strain: E50, DSM 2079, NCTC 10582, VPI-5482

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:190 , PRO A:191 , GLY A:192 , ILE A:193BINDING SITE FOR RESIDUE EDO A 296
2AC2SOFTWAREARG A:109 , LYS A:291 , ASP A:292 , LEU A:295 , HOH A:573BINDING SITE FOR RESIDUE EDO A 297
3AC3SOFTWAREPHE A:188 , TYR A:190 , LEU A:202 , LYS A:205 , TYR A:206BINDING SITE FOR RESIDUE EDO A 298

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QHP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QHP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QHP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QHP)

(-) Exons   (0, 0)

(no "Exon" information available for 2QHP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
 aligned with Q8A6W9_BACTN | Q8A6W9 from UniProtKB/TrEMBL  Length:295

    Alignment length:294
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291    
         Q8A6W9_BACTN     2 NNIIVGMGEALWDVLPEGKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIMEVFKEKQLKNQIERVDYPTGTVQVTLDDEGVPCYEIKEGVAWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEVSAYVCTQSGAMPELPVILKDRLL 295
               SCOP domains d2qhpa_ A: automated matches                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2qhpA00 A:2-295  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                  CATH domains
               Pfam domains -------PfkB-2qhpA01 A:9-289                                                                                                                                                                                                                                                                     ------ Pfam domains
         Sec.struct. author ..eeeee...eeeee..eeeeehhhhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhh...eeeeee....eeeee.------..eee...hhhhh...hhhhhhhhhheeeeee.hhhhhhhhhhhhhhhhhhhh......eeeee........hhhhhhhhhhhh.eeeeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeee.hhh.eeeee..eeeee...........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qhp A   2 NNIIVGmGEALWDVLPEGKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEImEVFKEKQLKNQIERVDYPTGTVQVT------PCYEIKEGVAWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTmPDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRmFGYPGIDLQDKCWILLAKYNLKmLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEVSAYVCTQSGAmPELPVILKDRLL 295
                                  | 11        21        31        41        51    |   61        71        81      | 91       101       111       121       131       141       151       161       171       181     | 191       201       211       221       231       241       251       261       271       281 |     291    
                                  8-MSE                                          56-MSE                   81     88                                                 140-MSE                                        187-MSE                210-MSE                                                                  283-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Ribokinase (55)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8A6W9_BACTN | Q8A6W9)
molecular function
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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