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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE SECRETED PROTEIN DUF305 FROM STREPTOMYCES COELICOLOR
 
Authors :  U. A. Ramagopal, M. Rutter, J. Adams, R. Toro, C. Groshong, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  27 Jun 07  (Deposition) - 17 Jul 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Duf305, Q8Ck01, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, M. Rutter, J. Adams, R. Toro, C. Groshong, J. M. Sauder, S. K. Burley, S. C. Almo
Structure Of Putative Secreted Protein Duf305 From Streptomyces Coelicolor.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE SECRETED PROTEIN
    Atcc: BAA-471
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BS-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 38-205
    Gene: SCO2239, SC1G2.01C, SCBAC17D6.06C
    Organism Scientific: STREPTOMYCES COELICOLOR A3(2)
    Organism Taxid: 100226
    Strain: A3(2), M145

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 29)

Asymmetric/Biological Unit (2, 29)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE27Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:62 , ALA A:81 , GLN A:82 , ALA A:85 , TYR B:62 , ALA B:81 , GLN B:82 , ALA B:85BINDING SITE FOR RESIDUE EDO A 1
2AC2SOFTWAREASP A:70 , GLU A:71 , GLU A:72BINDING SITE FOR RESIDUE EDO A 2

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:168 -A:172
2B:168 -B:172

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QF9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QF9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QF9)

(-) Exons   (0, 0)

(no "Exon" information available for 2QF9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q8CK01_STRCO | Q8CK01 from UniProtKB/TrEMBL  Length:208

    Alignment length:172
                                                                                                                                                                                                    208 
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207| 
         Q8CK01_STRCO    38 AADSADAGFARDMSVHHQQAVEMSYIVRDRTDDEEVRRLAYDIAQTQANQRGMMIGWLDLWALPKVSSDPPMTWMGMGDAPSAGEGSLMPGMATDAEMKKLGTLDGKQAEVYYLQLMTEHHRGGVHMAKGCVERCTVGVEKRLARGMVESQESEIRLMADLLAERGAKPRS-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qf9A01 A:38-203  [code=1.20.1260.10, no name defined]                                                                                                                ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh..----------.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qf9 A  38 AADSADAGFARDmSVHHQQAVEmSYIVRDRTDDEEVRRLAYDIAQTQANQRGmmIGWLDLWALPKVSSDPPmTWmGmG----------mPGmATDAEmKKLGTLDGKQAEVYYLQLmTEHHRGGVHmAKGCVERCTVGVEKRLARGmVESQESEIRLmADLLAERGAKEGHH 209
                                    47  |     57  |     67        77        87  ||    97       107 |  | || -       127 |     137       147      |157      |167       177      |187       197       207  
                                       50-MSE    60-MSE                        90-MSE            109-MSE||        126-MSE    |                154-MSE   164-MSE             184-MSE    195-MSE          
                                                                                91-MSE              112-MSE          129-MSE |                                                                          
                                                                                                      114-MSE              135-MSE                                                                      
                                                                                                       115                                                                                              


Chain B from PDB  Type:PROTEIN  Length:161
 aligned with Q8CK01_STRCO | Q8CK01 from UniProtKB/TrEMBL  Length:208

    Alignment length:174
                                                                                                                                                                                                    208   
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207|   
         Q8CK01_STRCO    38 AADSADAGFARDMSVHHQQAVEMSYIVRDRTDDEEVRRLAYDIAQTQANQRGMMIGWLDLWALPKVSSDPPMTWMGMGDAPSAGEGSLMPGMATDAEMKKLGTLDGKQAEVYYLQLMTEHHRGGVHMAKGCVERCTVGVEKRLARGMVESQESEIRLMADLLAERGAKPRS---   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qf9B01 B:38-203  [code=1.20.1260.10, no name defined]                                                                                                                -------- CATH domains
           Pfam domains (1) -----DUF305-2qf9B01 B:43-199                                                                                                                                      ------------ Pfam domains (1)
           Pfam domains (2) -----DUF305-2qf9B02 B:43-199                                                                                                                                      ------------ Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......-...hhhhh------------.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qf9 B  38 AADSADAGFARDmSVHHQQAVEmSYIVRDRTDDEEVRRLAYDIAQTQANQRGmmIGWLDLWALPKVS-DPPmTWmG------------mPGmATDAEmKKLGTLDGKQAEVYYLQLmTEHHRGGVHmAKGCVERCTVGVEKRLARGmVESQESEIRLmADLLAERGAKEGHHHH 211
                                    47  |     57  |     67        77        87  ||    97      |107 |  ||   -       127 |     137       147      |157      |167       177      |187       197       207    
                                       50-MSE    60-MSE                        90-MSE       104 |  |  ||          126-MSE    |                154-MSE   164-MSE             184-MSE    195-MSE            
                                                                                91-MSE        106  |  ||             129-MSE |                                                                            
                                                                                                 109-MSE                   135-MSE                                                                        
                                                                                                    112-MSE                                                                                               
                                                                                                     113
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QF9)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QF9)

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