2QE8 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE (AVA_4197) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.35 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   25 Jun 07 (Deposition) - 10 Jul 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Protein Ava_4197 (Yp_324691. 1) From Anabaena Variabilis Atcc 29413 At 1. 35 A Resolution
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	YP_324691.1, AVA_4197
	Organism Scientific	:	ANABAENA VARIABILIS ATCC 29413
	Organism Taxid	:	240292
	Strain	:	PCC 7937

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 25)

No.	Name	Count	Type	Full Name
1	GOL	10	Ligand/Ion	GLYCEROL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL
4	SO4	3	Ligand/Ion	SULFATE ION
5	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (5, 25)

No.	Name	Count	Type	Full Name
1	GOL	10	Ligand/Ion	GLYCEROL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL
4	SO4	3	Ligand/Ion	SULFATE ION
5	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (5, 50)

No.	Name	Count	Type	Full Name
1	GOL	20	Ligand/Ion	GLYCEROL
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	4	Ligand/Ion	TETRAETHYLENE GLYCOL
4	SO4	6	Ligand/Ion	SULFATE ION
5	UNL	4	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:274 , LYS A:281 , HOH A:533 , GLN B:184 , ASP B:186 , THR B:188 , ILE B:190	BINDING SITE FOR RESIDUE SO4 B 343
02	AC2	SOFTWARE	LYS A:256 , HOH A:596 , TRP B:207 , ARG B:220 , HOH B:498 , HOH B:609 , HOH B:660	BINDING SITE FOR RESIDUE SO4 B 344
03	AC3	SOFTWARE	TRP A:207 , ARG A:220 , HOH A:490 , HOH A:677 , HOH A:715 , LYS B:256	BINDING SITE FOR RESIDUE SO4 A 343
04	AC4	SOFTWARE	ASN A:20 , HIS A:34 , LEU A:69 , ASN A:122 , ASP A:123 , LEU A:194 , ASN A:197 , GLY A:198 , ASP A:250 , GLY A:251 , ASP A:293 , LEU A:310 , GOL A:346 , HOH A:367 , HOH A:767	BINDING SITE FOR RESIDUE UNL A 344
05	AC5	SOFTWARE	HIS B:34 , LEU B:69 , ASN B:122 , ASP B:123 , PRO B:192 , LEU B:194 , ASN B:197 , GLY B:198 , ASP B:250 , GLY B:251 , ASP B:293 , LEU B:310 , GOL B:347 , HOH B:366 , HOH B:470 , HOH B:746	BINDING SITE FOR RESIDUE UNL B 345
06	AC6	SOFTWARE	ASP A:26 , GLY A:27 , LEU A:46 , SER A:299 , TYR A:304 , HOH A:378 , HOH A:763	BINDING SITE FOR RESIDUE PG4 A 345
07	AC7	SOFTWARE	GLY B:27 , LEU B:46 , ASP B:300 , TYR B:304 , HOH B:405	BINDING SITE FOR RESIDUE PG4 B 346
08	AC8	SOFTWARE	GLN B:87 , PHE B:120 , ILE B:182 , UNL B:345 , HOH B:563	BINDING SITE FOR RESIDUE GOL B 347
09	AC9	SOFTWARE	TRP B:80 , ALA B:96 , SER B:105 , ARG B:106 , HOH B:705 , HOH B:739	BINDING SITE FOR RESIDUE GOL B 348
10	BC1	SOFTWARE	GLN B:161 , GLY B:162 , HOH B:570	BINDING SITE FOR RESIDUE GOL B 349
11	BC2	SOFTWARE	HOH B:460 , HOH B:475 , HOH B:627	BINDING SITE FOR RESIDUE GOL B 350
12	BC3	SOFTWARE	MSE B:41 , GLN B:42 , VAL B:43 , PHE B:54 , PHE B:65 , HOH B:418 , HOH B:462 , HOH B:597	BINDING SITE FOR RESIDUE GOL B 351
13	BC4	SOFTWARE	GLN A:87 , PHE A:120 , ILE A:182 , LEU A:194 , UNL A:344 , HOH A:608 , HOH A:653	BINDING SITE FOR RESIDUE GOL A 346
14	BC5	SOFTWARE	ALA A:12 , GLU A:13 , LEU A:14 , LEU A:46 , HOH A:430 , HOH A:543 , HOH A:688 , HOH A:749	BINDING SITE FOR RESIDUE GOL A 347
15	BC6	SOFTWARE	MSE A:41 , GLN A:42 , VAL A:43 , PHE A:54 , PHE A:65 , HOH A:429 , HOH A:445 , HOH A:571	BINDING SITE FOR RESIDUE GOL A 348
16	BC7	SOFTWARE	ILE A:78 , SER A:105 , ARG A:106 , HOH A:455	BINDING SITE FOR RESIDUE GOL A 349
17	BC8	SOFTWARE	ARG A:158 , VAL A:159 , LEU A:160 , GLN A:161 , ASP A:233 , HOH A:552	BINDING SITE FOR RESIDUE GOL A 350

(no "SS Bond" information available for 2QE8)

Asymmetric Unit

No.	Residues
1	Phe A:54	-	Pro A:55
2	Pro A:112	-	Pro A:113
3	Pro A:325	-	Pro A:326
4	Phe B:54	-	Pro B:55
5	Pro B:112	-	Pro B:113
6	Pro B:325	-	Pro B:326

(no "SAP(SNP)/Variant" information available for 2QE8)

(no "PROSITE Motif" information available for 2QE8)

(no "Exon" information available for 2QE8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:337
 aligned with Q3M5E0_ANAVT | Q3M5E0 from UniProtKB/TrEMBL  Length:342

    Alignment length:337
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       
         Q3M5E0_ANAVT     6 DRLEVVAELSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAAGIVGR 342
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qe8A00 A:6-342 TolB, C-terminal domain                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...eeeeee.....eeeee.hhhh....eeeee..eeee..............eeeeee....eeeeeehhhhhh...eeeeee....eeeeeee.............eeeee....eeeeee..hhhhheeeeee.....eeee..............ee..ee..ee.....ee.....eeeeee.....eeeeee....eeeeeehhhhh....hhhhhhhh.eeeee......eee.....eeeeehhh.eeeeee....eeeeeee.hhhh.eeeeee.....eeeee.hhhhhhhhh.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qe8 A   6 DRLEVVAELSLAPGNITLTPDGRLFLSLHQFYQPEmQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWmLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPmHSTSmYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAAGIVGR 342
                                    15        25        35     |  45        55        65        75     |  85        95       105       115       125       135       145       155       165       175       185       195       205       215  |    225       235       245       255       265       275       285       295       305       315       325       335       
                                                              41-MSE                                  81-MSE                                                                                                                             213-MSE|                                                                                                                            
                                                                                                                                                                                                                                              218-MSE

Chain B from PDB  Type:PROTEIN  Length:337
 aligned with Q3M5E0_ANAVT | Q3M5E0 from UniProtKB/TrEMBL  Length:342

    Alignment length:337
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       
         Q3M5E0_ANAVT     6 DRLEVVAELSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAAGIVGR 342
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qe8B00 B:6-342 TolB, C-terminal domain                                                                                                                                                                                                                                                                                                           CATH domains
           Pfam domains (1) -------------------------------------------------------------MRJP-2qe8B01 B:67-314                                                                                                                                                                                                                                   ---------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------MRJP-2qe8B02 B:67-314                                                                                                                                                                                                                                   ---------------------------- Pfam domains (2)
         Sec.struct. author ...eeeeee...eeeeee.....eeeee.hhhh....eeeee..eeee..............eeeeee....eeeeeehhhhhh...eeeeee....eeeeeee.............eeeee....eeeeee..hhhhheeeeee.....eeee..............ee..ee..ee.....ee.....eeeeee.....eeeeee....eeeeeehhhhh....hhhhhhhh.eeeee......eee.....eeeeehhh.eeeeee....eeeeeee.hhhh.eeeeee.....eeeee.hhhhhhhhh.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qe8 B   6 DRLEVVAELSLAPGNITLTPDGRLFLSLHQFYQPEmQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWmLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPmHSTSmYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAAGIVGR 342
                                    15        25        35     |  45        55        65        75     |  85        95       105       115       125       135       145       155       165       175       185       195       205       215  |    225       235       245       255       265       275       285       295       305       315       325       335       
                                                              41-MSE                                  81-MSE                                                                                                                             213-MSE|                                                                                                                            
                                                                                                                                                                                                                                              218-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2QE8)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 6 Propellor (215)

Topology: Neuraminidase (215)

Homologous Superfamily: TolB, C-terminal domain (42)

Anabaena variabilis atcc 29413. Organism_taxid: 240292. Strain: pcc 7937. (1)

1a	2qe8A00	A:6-342
1b	2qe8B00	B:6-342

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Beta_propeller (192)

Family: MRJP (1)

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (1)

1a	MRJP-2qe8B01	B:67-314
1b	MRJP-2qe8B02	B:67-314

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2QE8)

Asymmetric Unit
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	Cis Peptide Bonds
		Phe A:54 - Pro A:55	[ RasMol ]
		Phe B:54 - Pro B:55	[ RasMol ]
		Pro A:112 - Pro A:113	[ RasMol ]
		Pro A:325 - Pro A:326	[ RasMol ]
		Pro B:112 - Pro B:113	[ RasMol ]
		Pro B:325 - Pro B:326	[ RasMol ]

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Ligands, Modified Residues, Ions (5, 25)

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Cis Peptide Bonds (6, 6)

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