2QDY - JenaLib

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:110 , SER A:114 , HOH A:2172	BINDING SITE FOR RESIDUE FE A 300
02	AC2	SOFTWARE	THR B:121 , ARG B:132 , LEU B:208 , HOH B:2337	BINDING SITE FOR RESIDUE CL B 2001
03	AC3	SOFTWARE	SER A:20 , TRP A:24 , GLU B:31 , TRP B:32	BINDING SITE FOR RESIDUE CL A 2002
04	AC4	SOFTWARE	GLU B:134 , TYR B:135 , SER B:192 , HOH B:2182	BINDING SITE FOR RESIDUE CL B 2003
05	AC5	SOFTWARE	GLN A:174 , ARG A:175 , HOH A:2191 , HOH A:2207	BINDING SITE FOR RESIDUE CL A 2004
06	AC6	SOFTWARE	HOH B:2020 , HOH B:2059 , HOH B:2064 , HOH B:2073 , HOH B:2091 , HOH B:2224	BINDING SITE FOR RESIDUE MG B 2005
07	AC7	SOFTWARE	HOH A:2077 , HOH A:2162 , HOH B:2214 , HOH B:2227 , HOH B:2252	BINDING SITE FOR RESIDUE MG B 2006
08	AC8	SOFTWARE	HOH A:2238 , HOH B:2081 , HOH B:2314 , HOH B:2321 , HOH B:2328	BINDING SITE FOR RESIDUE MG A 2007
09	AC9	SOFTWARE	GLN A:91 , HOH A:2175 , TYR B:37 , MET B:40 , TYR B:72 , TYR B:76	BINDING SITE FOR RESIDUE IBN B 1000
10	BC1	SOFTWARE	TYR A:40 , GLY A:43 , TRP A:44 , THR A:47 , HOH A:2199	BINDING SITE FOR RESIDUE GOL A 1100
11	BC2	SOFTWARE	ASP A:77 , GLY A:78 , THR A:79 , TYR A:94 , ILE A:95 , HOH A:2088 , THR B:158	BINDING SITE FOR RESIDUE GOL A 1200
12	BC3	SOFTWARE	ARG A:139 , GLU A:140 , GLN B:11 , PRO B:137 , ASP B:193 , THR B:194 , ASP B:195 , HOH B:2095 , HOH B:2129 , HOH B:2170 , HOH B:2189	BINDING SITE FOR RESIDUE GOL B 1300
13	BC4	SOFTWARE	ARG B:147 , GLY B:148 , ARG B:149 , HOH B:2089 , HOH B:2133 , HOH B:2288	BINDING SITE FOR RESIDUE GOL B 1400
14	BC5	SOFTWARE	TYR A:161 , SER B:154 , HIS B:155 , HIS B:181 , HOH B:2106 , HOH B:2199	BINDING SITE FOR RESIDUE GOL B 1500
15	BC6	SOFTWARE	TRP A:65 , THR A:66 , ASP A:67 , PRO A:68 , ARG A:175 , HOH A:2061 , GLN B:92 , ASP B:93 , HOH B:2102 , HOH B:2214 , HOH B:2227 , HOH B:2333	BINDING SITE FOR RESIDUE GOL B 1600

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:197
 aligned with NHAA_RHOER | P13448 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:197
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       
           NHAA_RHOER    10 ENAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPT 206
               SCOP domains d2qdya_ A: automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2qdyA00 A:10-206 Nitrile Hydratase; Chain A                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee....eeeeee.......hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhh.......eeeeee.....eeeee..........hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qdy A  10 ENAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLcScTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPT 206
                                    19        29        39        49        59        69        79        89        99       109   | | 119       129       139       149       159       169       179       189       199       
                                                                                                                                 113-CSD                                                                                         
                                                                                                                                   115-CSD

Chain B from PDB  Type:PROTEIN  Length:211
 aligned with NHAB_RHOER | P13449 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 
           NHAB_RHOER     1 MDGVHDLAGVQGFGKVPHTVNADIGPTFHAEWEHLPYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQDELESLAGGPFPLSRPSESEGRPAPVETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFPDAIGHGRNDAGEEPTYHVKFAAEELFGSDTDGGSVVVDLFEGYLEPA 211
               SCOP domains d2qdyb_ B: Iron-containing nitrile hydratase                                                                                                                                                                        SCOP domains
               CATH domains 2qdyB01 B:1-110  [code=1.10.472.20, no name defined]                                                          2qdyB02 B:111-211  [code=2.30.30.50, no name defined]                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...........................eeee...........hhhhh..eeeeeee......hhhhhh..........eeeeeeehhhhhh......eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qdy B   1 MDGVHDLAGVQGFGKVPHTVNADIGPTFHAEWEHLPYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQDELESLAGGPFPLSRPSESEGRPAPVETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFPDAIGHGRNDAGEEPTYHVKFAAEELFGSDTDGGSVVVDLFEGYLEPA 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (3, 3)

Pfam Domains (0, 0)

Gene Ontology (7, 12)

Asymmetric Unit(hide GO term definitions)

Chain A (NHAA_RHOER | P13448)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0080109	indole-3-acetonitrile nitrile hydratase activity	Catalysis of the reaction: indole-3-acetonitrile + H2O = indole-3-acetamide.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0018822	nitrile hydratase activity	Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
	GO:0006807	nitrogen compound metabolic process	The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.

Chain B (NHAB_RHOER | P13449)

molecular function
	GO:0080109	indole-3-acetonitrile nitrile hydratase activity	Catalysis of the reaction: indole-3-acetonitrile + H2O = indole-3-acetamide.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0018822	nitrile hydratase activity	Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
	GO:0006807	nitrogen compound metabolic process	The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.

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	2qdy
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	NHAA_RHOER \| P13448
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	4.2.1.84
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 17)

Sites (15, 15)