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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF416 FAMILY PROTEIN (SBAL_3149) FROM SHEWANELLA BALTICA OS155 AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  13 Jun 07  (Deposition) - 26 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function (Yp_001051499. 1) From Shewanella Baltica Os155 At 1. 91 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN OF UNKNOWN FUNCTION
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_001051499.1, SBAL_3149
    Organism Scientific: SHEWANELLA BALTICA
    Organism Taxid: 325240
    Strain: OS155

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BEZ1Ligand/IonBENZOIC ACID
3GOL6Ligand/IonGLYCEROL
4MSE3Mod. Amino AcidSELENOMETHIONINE
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (5, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BEZ2Ligand/IonBENZOIC ACID
3GOL12Ligand/IonGLYCEROL
4MSE6Mod. Amino AcidSELENOMETHIONINE
5SO44Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:86 , GLU A:87 , ALA A:88 , HOH A:274 , HOH A:297BINDING SITE FOR RESIDUE SO4 A 200
02AC2SOFTWAREPHE A:67 , ASN A:68 , ILE A:69 , ASP A:70 , GLN A:109 , HOH A:332BINDING SITE FOR RESIDUE SO4 A 201
03AC3SOFTWAREGLU A:156 , HOH A:271BINDING SITE FOR RESIDUE ACT A 202
04AC4SOFTWAREASN A:33 , GLY A:90 , SER A:135 , PHE A:147 , HIS A:151 , HOH A:213 , HOH A:215BINDING SITE FOR RESIDUE BEZ A 203
05AC5SOFTWARESER A:59 , LEU A:65 , LYS A:66 , PHE A:67 , HOH A:281BINDING SITE FOR RESIDUE GOL A 204
06AC6SOFTWAREPHE A:7 , LYS A:158 , ASN A:162 , GOL A:209BINDING SITE FOR RESIDUE GOL A 205
07AC7SOFTWARELEU A:160 , SER A:163 , ILE A:167 , LEU A:182 , ASP A:185 , HOH A:270BINDING SITE FOR RESIDUE GOL A 206
08AC8SOFTWAREGLU A:39 , ASP A:146 , PHE A:147 , VAL A:198 , HOH A:243BINDING SITE FOR RESIDUE GOL A 207
09AC9SOFTWAREGLY A:44 , ASN A:79BINDING SITE FOR RESIDUE GOL A 208
10BC1SOFTWAREASP A:145 , GOL A:205BINDING SITE FOR RESIDUE GOL A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q9R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Q9R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q9R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q9R)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q9R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
 aligned with A3D7B7_SHEB5 | A3D7B7 from UniProtKB/TrEMBL  Length:199

    Alignment length:196
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      
         A3D7B7_SHEB5     4 KTGFFKRLKALTLPQKQLFATALCQRMLPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDVHLQRLEDNTPEPADFEAYGVYPAMDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVMEEEKELQNSLLEIIEENPKITAELVKGLRKDIIETGVSNIGISVA 199
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2q9rA01 A:4-198 YP_001051499.1 domain like                                                                                                                                                         - CATH domains
               Pfam domains -DUF416-2q9rA01 A:5-198                                                                                                                                                                            - Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q9r A   4 KTGFFKRLKALTLPQKQLFATALCQRmLPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDVHLQRLEDNTPEPADFEAYGVYPAmDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVmEEEKELQNSLLEIIEENPKITAELVKGLRKDIIETGVSNIGISVA 199
                                    13        23      | 33        43        53        63        73        83        93 |     103       113       123       133       143       153|      163       173       183       193      
                                                     30-MSE                                                           95-MSE                                                    154-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Q9R)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF416] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2Q9R)

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