2Q9O - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   NEAR-ATOMIC RESOLUTION STRUCTURE OF A MELANOCARPUS ALBOMYCES LACCASE

Authors :   N. Hakulinen, J. Rouvinen

Date :   13 Jun 07 (Deposition) - 25 Mar 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A,B,C^#,D^#,E^#,G^#,H^#,I^#,J^#,K^#,L^#
Biol. Unit 1: A,B  (1x)
( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Keywords :   Laccase, Multicopper Oxidase, Melanocarpus Albomyces, 2-Oxohistidine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Hakulinen, M. Andberg, J. Kallio, A. Koivula, K. Kruus, J. Rouvinen
A Near Atomic Resolution Structure Of A Melanocarpus Albomyces Laccase.
J. Struct. Biol. V. 162 29 2008
PubMed-ID: 18249560 | Reference-DOI: 10.1016/J.JSB.2007.12.003

Molecule 1 - LACCASE-1
	Chains	:	A, B
	EC Number	:	1.10.3.2
	Engineered	:	YES
	Expression System	:	HYPOCREA JECORINA
	Expression System Strain	:	RUTC-30
	Expression System Taxid	:	51453
	Gene	:	LAC1
	Organism Scientific	:	MELANOCARPUS ALBOMYCES
	Organism Taxid	:	204285
	Strain	:	VTT D-96490

		1	2	3	4	5	6	7	8	9	10	11
Asymmetric Unit	:	A	B	C^#	D^#	E^#	G^#	H^#	I^#	J^#	K^#	L^#
Biological Unit 1 (1x)	:	A	B

( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 55)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	CU	8	Ligand/Ion	COPPER (II) ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	MAN	9	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	25	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OHI	2	Mod. Amino Acid	3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE
7	OXY	2	Ligand/Ion	OXYGEN MOLECULE
8	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 18)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OHI	2	Mod. Amino Acid	3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE
7	OXY	2	Ligand/Ion	OXYGEN MOLECULE
8	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (51, 51)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:39 , ASN A:84 , HOH A:4382 , HOH A:4407 , HOH A:4559 , GLU B:78 , ARG B:126 , HOH B:4675	BINDING SITE FOR RESIDUE NAG A 1001
02	AC2	SOFTWARE	LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , HOH A:4041 , HOH A:4054 , HOH A:4146 , HOH A:4190 , HOH C:17	BINDING SITE FOR RESIDUE NAG C 11
03	AC3	SOFTWARE	GLU A:55 , ALA A:179 , ASP A:181 , ASP A:182 , TYR A:552 , HOH A:4011 , HOH A:4401 , HOH C:14 , HOH C:15 , HOH C:16	BINDING SITE FOR RESIDUE NAG C 12
04	AC4	SOFTWARE	ASN A:216 , THR A:218 , HIS A:311 , GLY A:317 , GLY A:318 , HOH D:23 , HOH D:24	BINDING SITE FOR RESIDUE NAG D 21
05	AC5	SOFTWARE	HIS A:311 , ALA A:313 , GLY A:314 , GLY A:317 , HOH A:4399	BINDING SITE FOR RESIDUE NAG D 22
06	AC6	SOFTWARE	TRP A:287 , ASN A:289 , THR A:291 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , HOH A:4168 , HOH E:35 , HOH E:37	BINDING SITE FOR RESIDUE NAG E 31
07	AC7	SOFTWARE	TYR A:214 , TRP A:287 , HIS A:305 , GLU A:323 , HOH E:34 , HOH E:38	BINDING SITE FOR RESIDUE NAG E 32
08	AC8	SOFTWARE	HOH E:36	BINDING SITE FOR RESIDUE MAN E 33
09	AC9	SOFTWARE	PRO A:355 , ASP A:356 , THR A:358 , LEU A:359 , ASN A:376 , HOH A:4414 , HOH A:4618	BINDING SITE FOR RESIDUE NAG A 1002
10	BC1	SOFTWARE	PRO A:355 , ASP A:356	BINDING SITE FOR RESIDUE NAG A 1003
11	BC2	SOFTWARE	LYS A:386 , TYR A:391 , ASN A:396 , SER A:398 , HOH A:4310 , HOH A:4520 , HOH A:4661 , GLN B:530	BINDING SITE FOR RESIDUE NAG A 1051
12	BC3	SOFTWARE	LEU A:167 , PHE A:170 , ASN A:201 , LEU A:227 , HOH G:73 , HOH G:76	BINDING SITE FOR RESIDUE NAG G 61
13	BC4	SOFTWARE	ASP A:166 , GLY A:168 , HOH G:67 , HOH G:68 , HOH G:70 , HOH G:77	BINDING SITE FOR RESIDUE NAG G 62
14	BC5	SOFTWARE	HOH G:72 , HOH G:77	BINDING SITE FOR RESIDUE MAN G 63
15	BC6	SOFTWARE	HOH A:4140 , HOH A:4528 , HOH G:74	BINDING SITE FOR RESIDUE MAN G 64
16	BC7	SOFTWARE	ARG A:10 , HOH G:66 , HOH G:69	BINDING SITE FOR RESIDUE MAN G 65
17	BC8	SOFTWARE	ASN A:244 , TYR A:286 , HOH A:4257 , HOH A:4403 , HOH A:4438 , ARG B:281 , HOH B:4275	BINDING SITE FOR RESIDUE NAG A 1071
18	BC9	SOFTWARE	GLU A:78 , ARG A:126 , ASN B:39 , ASN B:84 , HOH B:4488 , HOH B:4671	BINDING SITE FOR RESIDUE NAG B 1001
19	CC1	SOFTWARE	LYS B:56 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , HOH B:4033 , HOH B:4034 , HOH B:4138 , HOH H:1014 , HOH H:1018	BINDING SITE FOR RESIDUE NAG H 1011
20	CC2	SOFTWARE	GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , HOH B:4058 , HOH H:1015 , HOH H:1016 , HOH H:1017	BINDING SITE FOR RESIDUE NAG H 1012
21	CC3	SOFTWARE	HIS B:185 , HOH H:1016 , HOH H:1020 , HOH H:1021	BINDING SITE FOR RESIDUE MAN H 1013
22	CC4	SOFTWARE	ASN B:216 , THR B:218 , ILE B:309 , HIS B:311 , GLY B:317 , GLY B:318 , HOH I:1023 , HOH I:1024	BINDING SITE FOR RESIDUE NAG I 1021
23	CC5	SOFTWARE	HIS B:311 , ALA B:313 , GLY B:314 , HOH B:4427	BINDING SITE FOR RESIDUE NAG I 1022
24	CC6	SOFTWARE	TRP B:287 , ASN B:289 , HIS B:305 , ALA B:307 , GLU B:323 , THR B:325 , HOH B:4142 , HOH J:1034	BINDING SITE FOR RESIDUE NAG J 1031
25	CC7	SOFTWARE	TYR B:214 , TRP B:287 , HIS B:305 , GLU B:323 , HOH J:1034	BINDING SITE FOR RESIDUE NAG J 1032
26	CC8	SOFTWARE	PRO B:355 , ASP B:356 , THR B:358 , LEU B:359 , ASN B:376 , HOH K:1043	BINDING SITE FOR RESIDUE NAG K 1041
27	CC9	SOFTWARE	PRO B:355 , HOH K:1044	BINDING SITE FOR RESIDUE NAG K 1042
28	DC1	SOFTWARE	ASP A:379 , ASN A:381 , HOH A:4581 , LYS B:386 , ASN B:396 , HOH B:4229 , HOH B:4497 , HOH B:4569 , HOH B:4685	BINDING SITE FOR RESIDUE NAG B 1051
29	DC2	SOFTWARE	LEU B:167 , ASN B:201 , LEU B:227 , HOH L:1073	BINDING SITE FOR RESIDUE NAG L 1061
30	DC3	SOFTWARE	ASP B:166 , HOH L:1067 , HOH L:1068 , HOH L:1070 , HOH L:1072	BINDING SITE FOR RESIDUE NAG L 1062
31	DC5	SOFTWARE	ASP B:166 , HOH L:1071	BINDING SITE FOR RESIDUE MAN L 1064
32	DC6	SOFTWARE	ARG B:10 , HOH B:4677 , HOH L:1066 , HOH L:1069 , HOH L:1077 , HOH L:1078	BINDING SITE FOR RESIDUE MAN L 1065
33	DC7	SOFTWARE	HIS A:431 , CYS A:503 , ILE A:505 , HIS A:508 , LEU A:513	BINDING SITE FOR RESIDUE CU A 2001
34	DC8	SOFTWARE	HIS A:140 , HIS A:436 , HIS A:502	BINDING SITE FOR RESIDUE CU A 2002
35	DC9	SOFTWARE	HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504	BINDING SITE FOR RESIDUE CU A 2003
36	EC1	SOFTWARE	HIS A:93 , HIS A:95 , HIS A:434 , HIS A:436	BINDING SITE FOR RESIDUE CU A 2004
37	EC2	SOFTWARE	HIS A:93 , GLY A:96 , HIS A:434 , HOH A:4107	BINDING SITE FOR RESIDUE CL A 2010
38	EC3	SOFTWARE	HIS B:431 , CYS B:503 , ILE B:505 , HIS B:508	BINDING SITE FOR RESIDUE CU B 2001
39	EC4	SOFTWARE	HIS B:140 , HIS B:436 , HIS B:502	BINDING SITE FOR RESIDUE CU B 2002
40	EC5	SOFTWARE	HIS B:95 , TRP B:136 , HIS B:138 , HIS B:504	BINDING SITE FOR RESIDUE CU B 2003
41	EC6	SOFTWARE	HIS B:93 , HIS B:95 , HIS B:434 , HIS B:436	BINDING SITE FOR RESIDUE CU B 2004
42	EC7	SOFTWARE	HIS B:93 , GLY B:96 , HIS B:434 , HOH B:4160	BINDING SITE FOR RESIDUE CL B 2010
43	EC8	SOFTWARE	ARG A:492 , HOH A:4612 , HOH A:4621 , ARG B:128 , ARG B:130	BINDING SITE FOR RESIDUE SO4 A 4001
44	EC9	SOFTWARE	ARG A:128 , ARG A:130 , ARG B:492	BINDING SITE FOR RESIDUE SO4 B 4002
45	FC1	SOFTWARE	ARG A:520 , ARG A:527 , HOH A:4260 , HOH A:4461 , HOH A:4513 , HOH A:4605 , HOH A:4638 , HOH A:4654 , ARG B:520 , ARG B:527	BINDING SITE FOR RESIDUE SO4 A 4003
46	FC2	SOFTWARE	PRO B:447 , ASP B:448 , ARG B:467 , HOH B:4239 , HOH B:4445	BINDING SITE FOR RESIDUE SO4 B 4004
47	FC3	SOFTWARE	PRO A:447 , ASP A:448 , ARG A:467 , HOH A:4275 , HOH A:4664	BINDING SITE FOR RESIDUE SO4 A 4005
48	FC4	SOFTWARE	HIS A:93 , HIS A:95 , HIS A:138 , HIS A:140 , HIS A:434 , HIS A:436 , HIS A:502 , HIS A:504	BINDING SITE FOR RESIDUE OXY A 4006
49	FC5	SOFTWARE	HIS B:93 , HIS B:95 , HIS B:138 , HIS B:140 , HIS B:434 , HIS B:436 , HIS B:502 , HIS B:504	BINDING SITE FOR RESIDUE OXY B 4005
50	FC6	SOFTWARE	ALA A:191 , PRO A:192 , PHE A:371 , TRP A:373 , PHE A:427 , LEU A:429 , HOH A:4082 , HOH A:4093 , HOH A:4189	BINDING SITE FOR RESIDUE GOL A 3001
51	FC7	SOFTWARE	ALA B:191 , PRO B:192 , PHE B:371 , TRP B:373 , LEU B:429 , HOH B:4059 , HOH B:4089 , HOH B:4198	BINDING SITE FOR RESIDUE GOL B 3002

Asymmetric Unit

No.	Residues
1	A:4	-	A:12
2	A:114	-	A:540
3	A:298	-	A:332
4	B:4	-	B:12
5	B:114	-	B:540
6	B:298	-	B:332

Asymmetric Unit

No.	Residues
1	Thr A:368	-	Pro A:369
2	Thr B:368	-	Pro B:369

(no "SAP(SNP)/Variant" information available for 2Q9O)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	LAC1_MELAO	547-567	2	A:497-517 B:497-517
2	MULTICOPPER_OXIDASE2	PS00080	Multicopper oxidases signature 2.	LAC1_MELAO	552-563	2	A:502-513 B:502-513

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	LAC1_MELAO	547-567	2	A:497-517 B:497-517
2	MULTICOPPER_OXIDASE2	PS00080	Multicopper oxidases signature 2.	LAC1_MELAO	552-563	2	A:502-513 B:502-513

(no "Exon" information available for 2Q9O)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:559
 aligned with LAC1_MELAO | Q70KY3 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:559
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600         
           LAC1_MELAO    51 EPTCNTPSNRACWSDGFDINTDYEVSTPDTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEWRAYWPTNPYPKIDSGL 609
               SCOP domains d2q9oa1 A:1-162 Laccase                                                                                                                                           d2q9oa2 A:163-343 Laccase                                                                                                                                                            d2q9oa3 A:344-559 Laccase                                                                                                                                                                                                SCOP domains
               CATH domains 2q9oA01 A:1-158 Cupredoxins -  blue copper proteins                                                                                                           2q9oA02 A:159-342 Cupredoxins -  blue copper proteins                                                                                                                                   2q9oA03 A:343-559 Cupredoxins -  blue copper proteins                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee..ee..............eeeeeeeeeeeeeee.....eeeeeeee........eeee...eeeeeeeee.......eeee......hhhhh..............eeeeeeee....eeeeeee...hhhhhh.eeeeeee........eeeeeeeeeee...hhhhhhhhhh........eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeee.hhhhh.........eeeeee.........................................hhh.eeeeeee.......eeee...........hhhhhhhhh....hhhh.eeee.....eeeeeeee.........eeeee....eeeeee..............hhhhhhhhh......ee.eeee....eeeeeee....eeeeeee.hhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_---------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q9o A   1 EPTCNTPSNRACWSDGFDINTDYEVSTPDTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIhQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEWRAYWPTNPYPKIDSGL 559
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550         
                                                                                                                            98-OHI

Chain B from PDB  Type:PROTEIN  Length:559
 aligned with LAC1_MELAO | Q70KY3 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:559
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600         
           LAC1_MELAO    51 EPTCNTPSNRACWSDGFDINTDYEVSTPDTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEWRAYWPTNPYPKIDSGL 609
               SCOP domains d2q9ob1 B:1-162 Laccase                                                                                                                                           d2q9ob2 B:163-343 Laccase                                                                                                                                                            d2q9ob3 B:344-559 Laccase                                                                                                                                                                                                SCOP domains
               CATH domains 2q9oB01 B:1-158 Cupredoxins -  blue copper proteins                                                                                                           2q9oB02 B:159-342 Cupredoxins -  blue copper proteins                                                                                                                                   2q9oB03 B:343-559 Cupredoxins -  blue copper proteins                                                                                                                                                                     CATH domains
           Pfam domains (1) ----------------------------------------Cu-oxidase_3-2q9oB05 B:41-160                                                                                           -----Cu-oxidase-2q9oB01 B:166-315                                                                                                                          -------------------------------------------Cu-oxidase_2-2q9oB03 B:359-523                                                                                                                                       ------------------------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------Cu-oxidase_3-2q9oB06 B:41-160                                                                                           -----Cu-oxidase-2q9oB02 B:166-315                                                                                                                          -------------------------------------------Cu-oxidase_2-2q9oB04 B:359-523                                                                                                                                       ------------------------------------ Pfam domains (2)
         Sec.struct. author ...........eee..ee..............eeeeeeeeeeeeeee.....eeeeeeee........eeee...eeeeeeeee.......eeee......hhhhh..............eeeeeeee....eeeeeee...hhhhhh.eeeeeee........eeeeeeeeeee...hhhhhhhhhh........eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeee.hhhhh.........eeeeee.........................................hhh.eeeeeee.......eeee...........hhhhhhhh.....hhhh.eeee.....eeeeeeee.........eeeee....eeeeee..............hhhhhhhhh......ee.eeee....eeeeeee....eeeeeee.hhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_---------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q9o B   1 EPTCNTPSNRACWSDGFDINTDYEVSTPDTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIhQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEWRAYWPTNPYPKIDSGL 559
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550         
                                                                                                                            98-OHI

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: Multidomain cupredoxins (146)

Protein domain: Laccase (13)

Fungus (Melanocarpus albomyces) [TaxId: 204285] (8)

1a	d2q9oa1	A:1-162
1b	d2q9oa2	A:163-343
1c	d2q9oa3	A:344-559
1d	d2q9ob1	B:1-162
1e	d2q9ob2	B:163-343
1f	d2q9ob3	B:344-559

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Cupredoxins - blue copper proteins (420)

Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490. (7)

1a	2q9oA01	A:1-158
1b	2q9oB01	B:1-158
1c	2q9oA02	A:159-342
1d	2q9oB02	B:159-342
1e	2q9oA03	A:343-559
1f	2q9oB03	B:343-559

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: CU_oxidase (192)

Family: Cu-oxidase (74)

Melanocarpus albomyces (2)

1a	Cu-oxidase-2q9oB01	B:166-315
1b	Cu-oxidase-2q9oB02	B:166-315

Family: Cu-oxidase_2 (24)

Melanocarpus albomyces (2)

2a	Cu-oxidase_2-2q9oB03	B:359-523
2b	Cu-oxidase_2-2q9oB04	B:359-523

Family: Cu-oxidase_3 (79)

Melanocarpus albomyces (2)

3a	Cu-oxidase_3-2q9oB05	B:41-160
3b	Cu-oxidase_3-2q9oB06	B:41-160

Asymmetric Unit(hide GO term definitions)

Chain A,B (LAC1_MELAO | Q70KY3)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0052716	hydroquinone:oxygen oxidoreductase activity	Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0046274	lignin catabolic process	The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0043245	extraorganismal space	The environmental space outside of an organism; this may be a host organism in the case of parasitic and symbiotic organisms.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OHI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OXY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]
		DC6	[ RasMol ]	+environment [ RasMol ]
		DC7	[ RasMol ]	+environment [ RasMol ]
		DC8	[ RasMol ]	+environment [ RasMol ]
		DC9	[ RasMol ]	+environment [ RasMol ]
		EC1	[ RasMol ]	+environment [ RasMol ]
		EC2	[ RasMol ]	+environment [ RasMol ]
		EC3	[ RasMol ]	+environment [ RasMol ]
		EC4	[ RasMol ]	+environment [ RasMol ]
		EC5	[ RasMol ]	+environment [ RasMol ]
		EC6	[ RasMol ]	+environment [ RasMol ]
		EC7	[ RasMol ]	+environment [ RasMol ]
		EC8	[ RasMol ]	+environment [ RasMol ]
		EC9	[ RasMol ]	+environment [ RasMol ]
		FC1	[ RasMol ]	+environment [ RasMol ]
		FC2	[ RasMol ]	+environment [ RasMol ]
		FC3	[ RasMol ]	+environment [ RasMol ]
		FC4	[ RasMol ]	+environment [ RasMol ]
		FC5	[ RasMol ]	+environment [ RasMol ]
		FC6	[ RasMol ]	+environment [ RasMol ]
		FC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Thr A:368 - Pro A:369	[ RasMol ]
		Thr B:368 - Pro B:369	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2q9o
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	LAC1_MELAO \| Q70KY3
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.10.3.2
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	LAC1_MELAO \| Q70KY3
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	LAC1_MELAO \| Q70KY3	:	1gw0 2ih8 2ih9 3dkh 3fu7 3fu8 3fu9 3qpk

1gw0	MAL
2ih8	A LOW-DOSE CRYSTAL STRUCTURE OF RMAL
2ih9	A HIGH-DOSE CRYSTAL STRUCTURE OF RMAL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 55)

Sites (51, 51)

SS Bonds (6, 6)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (3, 6)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File