2Q9B - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF FTSY:GMPPNP COMPLEX

Authors :   C. L. Reyes, R. M. Stroud

Date :   12 Jun 07 (Deposition) - 03 Jul 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)
Biol. Unit 4: A (1x),B (1x)

Keywords :   Inner Membrane, Ribonucleoprotein, Nucleotide-Binding, Signal Recognition Particle, Srp, Gdp, Ffh, Ftsy, Gtpase, Rna-Binding, Gtp- Binding, Cell Division, Membrane, Cell Cycle, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. L. Reyes, E. Rutenber, P. Walter, R. M. Stroud
X-Ray Structures Of The Signal Recognition Particle Recepto Reveal Targeting Cycle Intermediates.
Plos One V. 2 E607 2007
PubMed-ID: 17622352 | Reference-DOI: 10.1371/JOURNAL.PONE.0000607

Molecule 1 - CELL DIVISION PROTEIN FTSY
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28B
	Expression System Strain	:	BL21(DE3) ROSETTA
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FTSY
	Organism Scientific	:	THERMUS AQUATICUS
	Organism Taxid	:	271
	Synonym	:	FTSY

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B
Biological Unit 4 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
2	GNP	-1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 18)

No.	Name	Count	Type	Full Name
1	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:195 , LEU A:196 , HIS A:197 , HOH A:1024 , HOH A:1032 , ASN B:111 , ARG B:195	BINDING SITE FOR RESIDUE SO4 A 952
02	AC2	SOFTWARE	THR A:198 , LYS A:199 , HOH A:1063 , PHE B:141 , ARG B:142 , ARG B:195	BINDING SITE FOR RESIDUE SO4 A 953
03	AC3	SOFTWARE	GLY A:45 , LEU A:46 , HOH A:1052 , ARG B:17	BINDING SITE FOR RESIDUE SO4 A 954
04	AC4	SOFTWARE	ARG A:17 , LYS A:262 , GLY B:45 , LEU B:46 , EDO B:901 , HOH B:1010 , HOH B:1039	BINDING SITE FOR RESIDUE SO4 B 955
05	AC5	SOFTWARE	SER A:59 , HOH A:1005	BINDING SITE FOR RESIDUE SO4 A 956
06	AC6	SOFTWARE	GLY B:112 , VAL B:113 , GLY B:114 , LYS B:115 , THR B:116 , ARG B:142	BINDING SITE FOR RESIDUE SO4 B 957
07	AC7	SOFTWARE	HIS A:197 , HOH A:1002 , ARG B:142	BINDING SITE FOR RESIDUE SO4 A 958
08	AC8	SOFTWARE	ARG A:183 , TYR A:185 , LYS B:132	BINDING SITE FOR RESIDUE SO4 A 959
09	AC9	SOFTWARE	VAL B:231 , THR B:260 , ALA B:261	BINDING SITE FOR RESIDUE EDO B 900
10	BC1	SOFTWARE	ALA A:41 , LEU B:40 , ASP B:43 , GLY B:45 , LEU B:46 , SO4 B:955	BINDING SITE FOR RESIDUE EDO B 901
11	BC2	SOFTWARE	PRO B:159 , ARG B:183	BINDING SITE FOR RESIDUE EDO B 902
12	BC3	SOFTWARE	LYS B:101 , LYS B:222 , GLU B:223	BINDING SITE FOR RESIDUE EDO B 903
13	BC4	SOFTWARE	TYR A:174 , LYS A:181 , LYS A:215 , ALA A:216	BINDING SITE FOR RESIDUE EDO A 904
14	BC5	SOFTWARE	ASN A:128 , LEU A:129 , THR B:198 , LYS B:199 , ASN B:201 , EDO B:906 , HOH B:1023	BINDING SITE FOR RESIDUE EDO A 905
15	BC6	SOFTWARE	PRO A:97 , LEU A:129 , EDO A:905 , HOH A:1016 , HOH B:1038	BINDING SITE FOR RESIDUE EDO B 906
16	BC7	SOFTWARE	LYS A:210 , ALA A:214 , GLU A:220 , PRO A:221	BINDING SITE FOR RESIDUE EDO A 907
17	BC8	SOFTWARE	LYS B:121 , ARG B:124 , TYR B:125 , PRO B:286 , ASP B:287	BINDING SITE FOR RESIDUE EDO B 908
18	BC9	SOFTWARE	ASN A:111 , GLY A:112 , VAL A:113 , GLY A:114 , LYS A:115 , THR A:116 , THR A:117 , ASP A:139 , ALA A:143 , ALA A:144 , THR A:255 , LYS A:256 , GLY A:281 , GLY A:283 , GLU A:284 , HOH A:977 , HOH A:984	BINDING SITE FOR RESIDUE GNP A 950

(no "SS Bond" information available for 2Q9B)

Asymmetric Unit

No.	Residues
1	Glu A:220	-	Pro A:221
2	Glu B:220	-	Pro B:221

(no "SAP(SNP)/Variant" information available for 2Q9B)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SRP54	PS00300	SRP54-type proteins GTP-binding domain signature.	FTSY_THEAQ	276-289	2	A:276-289 B:276-289

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SRP54	PS00300	SRP54-type proteins GTP-binding domain signature.	FTSY_THEAQ	276-289	1	A:276-289 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SRP54	PS00300	SRP54-type proteins GTP-binding domain signature.	FTSY_THEAQ	276-289	1	- B:276-289

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SRP54	PS00300	SRP54-type proteins GTP-binding domain signature.	FTSY_THEAQ	276-289	2	A:276-289 B:276-289

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SRP54	PS00300	SRP54-type proteins GTP-binding domain signature.	FTSY_THEAQ	276-289	2	A:276-289 B:276-289

(no "Exon" information available for 2Q9B)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:303
 aligned with FTSY_THEAQ | P83749 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           FTSY_THEAQ     1 MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhh..............eeeee.....hhhhhhhhhhhhhhhh...eeeee..........hhhhhhhhhh..ee......hhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhh..eeeeehhhhh.hhhhhhhhhhhhh..eeeee...hhh.eee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRP54         -------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q9b A   1 MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain B from PDB  Type:PROTEIN  Length:287
 aligned with FTSY_THEAQ | P83749 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:304
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300    
           FTSY_THEAQ     1 MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED 304
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhh..---hhhhhhhhhhhhh...--------------..........eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh..ee......hhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhh..eeeee...hhh.eee.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRP54         --------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q9b B   1 MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASG---LKEAVKEKLVGMLEPD--------------KPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED 304
                                    10        20        30        40        50        60   |    70        |-         -   |   100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300    
                                                                                      60  64             79             94

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2Q9B)

(no "CATH Domain" information available for 2Q9B)

(no "Pfam Domain" information available for 2Q9B)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FTSY_THEAQ | P83749)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
	GO:0006612	protein targeting to membrane	The process of directing proteins towards a membrane, usually using signals contained within the protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0031226	intrinsic component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Glu A:220 - Pro A:221	[ RasMol ]
		Glu B:220 - Pro B:221	[ RasMol ]

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	2q9b
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	FTSY_THEAQ \| P83749
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	FTSY_THEAQ \| P83749	:	1okk 1rj9 2cnw 2iyl 2j7p 2q9a 2q9c 2xkv

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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