Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF ARSH FROM SINORHIZOBIUM MELILOTI
 
Authors :  J. Ye, H. Yang, H. Bhattacharjee, B. P. Rosen
Date :  04 Jun 07  (Deposition) - 11 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Alpha/Beta, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Ye, H. Yang, B. P. Rosen, H. Bhattacharjee
Crystal Structure Of The Flavoprotein Arsh From Sinorhizobium Meliloti
Febs Lett. V. 581 3996 2007
PubMed-ID: 17673204  |  Reference-DOI: 10.1016/J.FEBSLET.2007.07.039

(-) Compounds

Molecule 1 - ARSH
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARSH
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 382

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:43 , ARG A:45 , SER A:48 , TYR A:49 , SER A:50 , PRO A:107 , HOH A:2044 , HOH A:2055BINDING SITE FOR RESIDUE SO4 A 2001
2AC2SOFTWARESER B:43 , ARG B:45 , SER B:48 , TYR B:49 , SER B:50 , PRO B:107 , HOH B:2127BINDING SITE FOR RESIDUE SO4 B 2002
3AC3SOFTWARESER C:43 , ARG C:45 , VAL C:47 , SER C:48 , TYR C:49 , SER C:50 , PRO C:107 , HOH C:2059 , HOH C:2153BINDING SITE FOR RESIDUE SO4 C 2003
4AC4SOFTWARESER D:43 , ARG D:45 , VAL D:47 , SER D:48 , TYR D:49 , SER D:50 , PRO D:107 , HOH D:2045BINDING SITE FOR RESIDUE SO4 D 2004
5AC5SOFTWARESER F:43 , ARG F:45 , SER F:48 , TYR F:49 , SER F:50 , PRO F:107 , HOH F:2059 , HOH F:2061BINDING SITE FOR RESIDUE SO4 F 2006
6AC6SOFTWARESER G:43 , ARG G:45 , SER G:48 , TYR G:49 , SER G:50 , PRO G:107 , HOH G:2048 , HOH G:2091BINDING SITE FOR RESIDUE SO4 G 2007
7AC7SOFTWARESER H:43 , ARG H:45 , VAL H:47 , SER H:48 , TYR H:49 , SER H:50 , PRO H:107 , HOH H:2179BINDING SITE FOR RESIDUE SO4 H 2008

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q62)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Q62)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q62)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q62)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q62)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:220
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227
          ARREH_RHIME     8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKE 227
               SCOP domains d2q62a_ A: automated matches                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 A   8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKE 227
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227


Chain B from PDB  Type:PROTEIN  Length:222
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:222
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227  
          ARREH_RHIME     8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
               SCOP domains d2q62b_ B: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeeeee..eehhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2q62 B   8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227  


Chain C from PDB  Type:PROTEIN  Length:221
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:221
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 
          ARREH_RHIME     9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
               SCOP domains d2q62c_ C: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhhh.eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 C   9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 


Chain D from PDB  Type:PROTEIN  Length:235
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:235
                                                                                                                                                                                                                                                                   241 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237   | 
          ARREH_RHIME     8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESAAELEHRVTLKSV-   -
               SCOP domains d2q62d_ D: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh...hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 D   8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESAAELEHRVTLKSVH 242
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237     


Chain E from PDB  Type:PROTEIN  Length:221
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:221
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 
          ARREH_RHIME     9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
               SCOP domains d2q62e_ E: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 E   9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 


Chain F from PDB  Type:PROTEIN  Length:219
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:219
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218         
          ARREH_RHIME     9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKE 227
               SCOP domains d2q62f_ F: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhh........eeeeee......hhhhhhhhhhhhhhhhhh.eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 F   9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKE 227
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218         


Chain G from PDB  Type:PROTEIN  Length:219
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:219
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217         
          ARREH_RHIME     8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERK 226
               SCOP domains d2q62g_ G: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 G   8 HDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERK 226
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217         


Chain H from PDB  Type:PROTEIN  Length:221
 aligned with ARREH_RHIME | Q92R45 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:221
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 
          ARREH_RHIME     9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
               SCOP domains d2q62h_ H: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh........eeeeee......hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhhh..ee....eee.hhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q62 H   9 DLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPNQSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERKESA 229
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Q62)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Q62)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ARREH_RHIME | Q92R45)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0052873    FMN reductase (NADPH) activity    Catalysis of the reaction: FMNH2 + NADP+ = FMN + NADPH + 2 H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2q62)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2q62
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ARREH_RHIME | Q92R45
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ARREH_RHIME | Q92R45
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2Q62)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2Q62)