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(-) Description

Title :  FORMYLGLYCINE GENERATING ENZYME FROM STREPTOMYCES COELICOLOR
 
Authors :  B. L. Carlson, E. R. Ballister, E. Skordalakes, D. S. King, M. A. Breiden S. A. Gilmore, J. M. Berger, C. R. Bertozzi
Date :  23 May 07  (Deposition) - 01 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Fge, Formylglycine, Sulfatase, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Carlson, E. R. Ballister, E. Skordalakes, D. S. King, M. A. Breidenbach, S. A. Gilmore, J. M. Berger, C. R. Bertozzi
Function And Structure Of A Prokaryotic Formylglycine-Generating Enzyme.
J. Biol. Chem. V. 283 20117 2008
PubMed-ID: 18390551  |  Reference-DOI: 10.1074/JBC.M800217200

(-) Compounds

Molecule 1 - FORMYLGLYCINE GENERATING ENZYME
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: A3(2)

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:194 , ILE A:195 , ASP A:208 , HIS A:210 , HOH A:342 , HOH A:378BINDING SITE FOR RESIDUE CA A 315
2AC2SOFTWAREASN C:194 , ILE C:195 , ASP C:208 , HIS C:210 , HOH C:324 , HOH C:428BINDING SITE FOR RESIDUE CA C 315
3AC3SOFTWAREASN D:194 , ILE D:195 , ASP D:208 , HIS D:210 , HOH D:352 , HOH D:354BINDING SITE FOR RESIDUE CA D 315
4AC4SOFTWAREASN E:194 , ILE E:195 , ASP E:208 , HIS E:210 , HOH E:456BINDING SITE FOR RESIDUE CA E 315
5AC5SOFTWAREASN B:194 , ILE B:195 , ASP B:208 , HIS B:210 , HOH B:359 , HOH B:410BINDING SITE FOR RESIDUE CA B 315

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:272 -A:277
2B:272 -B:277
3C:272 -C:277
4D:272 -D:277
5E:272 -E:277

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Thr A:50 -Pro A:51
2Phe A:200 -Pro A:201
3Thr B:50 -Pro B:51
4Phe B:200 -Pro B:201
5Thr C:50 -Pro C:51
6Phe C:200 -Pro C:201
7Thr D:50 -Pro D:51
8Phe D:200 -Pro D:201
9Thr E:50 -Pro E:51
10Phe E:200 -Pro E:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q17)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q17)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q17)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
 aligned with Q9F3C7_STRCO | Q9F3C7 from UniProtKB/TrEMBL  Length:314

    Alignment length:288
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297        
         Q9F3C7_STRCO    18 ARPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDA 305
               SCOP domains d2q17a_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2q17A00 A:18-305 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeee..eeeee.......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh..hhh.eeee......eeeee.........................hhhhhhhhhhhhh....hhhhhhhhhhh.............hhhhh...........................................eeeeeee...hhhhhh.............eeee...................eee........ee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2q17 A  18 ARPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDA 305
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297        


Chain B from PDB  Type:PROTEIN  Length:288
 aligned with Q9F3C7_STRCO | Q9F3C7 from UniProtKB/TrEMBL  Length:314

    Alignment length:288
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298        
         Q9F3C7_STRCO    19 RPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDAD 306
               SCOP domains d2q17b_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2q17B00 B:19-306 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee..eeeee.......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh..hhhhh.........eeeee.........................hhhhhhhhhhhhh....hhhhhhhhhhh.............hhhhh...........................................eeeeeee...hhhhhh.............eeee..................eeee........eee..eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2q17 B  19 RPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDAD 306
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298        


Chain C from PDB  Type:PROTEIN  Length:287
 aligned with Q9F3C7_STRCO | Q9F3C7 from UniProtKB/TrEMBL  Length:314

    Alignment length:287
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       
         Q9F3C7_STRCO    20 PRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDAD 306
               SCOP domains d2q17c_ C: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2q17C00 C:20-306 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeee.......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh..hhh.eeeee..eeeeeeee.........................hhhhhhhhhhhh.....hhhhhhhhhhh.............hhhhh...........................................eeeeeee...hhhhhh.............eeee...................eee........ee...eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q17 C  20 PRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDAD 306
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       


Chain D from PDB  Type:PROTEIN  Length:286
 aligned with Q9F3C7_STRCO | Q9F3C7 from UniProtKB/TrEMBL  Length:314

    Alignment length:286
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299      
         Q9F3C7_STRCO    20 PRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDA 305
               SCOP domains d2q17d_ D: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2q17D00 D:20-305 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeee.......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh..hhh.eeee......eeeee.........................hhhhhhhhhhhhh....hhhhhhhhhhh.............hhhhh...........................................eeeeeee....hhhhh.............eeee..................eeee........ee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q17 D  20 PRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDA 305
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299      


Chain E from PDB  Type:PROTEIN  Length:289
 aligned with Q9F3C7_STRCO | Q9F3C7 from UniProtKB/TrEMBL  Length:314

    Alignment length:289
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298         
         Q9F3C7_STRCO    19 RPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDADL 307
               SCOP domains d2q17e_ E: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2q17E00 E:19-307 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                                 CATH domains
           Pfam domains (1) ---FGE-sulfatase-2q17E01 E:22-303                                                                                                                                                                                                                                                            ---- Pfam domains (1)
           Pfam domains (2) ---FGE-sulfatase-2q17E02 E:22-303                                                                                                                                                                                                                                                            ---- Pfam domains (2)
           Pfam domains (3) ---FGE-sulfatase-2q17E03 E:22-303                                                                                                                                                                                                                                                            ---- Pfam domains (3)
           Pfam domains (4) ---FGE-sulfatase-2q17E04 E:22-303                                                                                                                                                                                                                                                            ---- Pfam domains (4)
           Pfam domains (5) ---FGE-sulfatase-2q17E05 E:22-303                                                                                                                                                                                                                                                            ---- Pfam domains (5)
         Sec.struct. author .......eeee..eeeee.......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh..hhh.eeee......eeeee.........................hhhhhhhhhhhhh....hhhhhhhhhhh.............hhhhh...........................................eeeeeee...hhhhhh.............eeee..................eeee........ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q17 E  19 RPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVTDAERFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDADL 307
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: FGE-sulfatase] (9)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q9F3C7_STRCO | Q9F3C7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  2q17
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 Related Entries

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