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(-) Description

Title :  CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE (YP_295895.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 May 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Yp_295895. 1, Acetyltransferase (Gnat) Family, Gcn5-Related N- Acetyltransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Gcn5-Related N-Acetyltransferase (Yp_295895. 1) From Ralstonia Eutropha Jmp134 At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GCN5-RELATED N-ACETYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_295895.1, REUT_A1686
    Organism Scientific: RALSTONIA EUTROPHA JMP134
    Organism Taxid: 264198

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 18)

Asymmetric Unit (6, 18)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2FMT4Ligand/IonFORMIC ACID
3MG2Ligand/IonMAGNESIUM ION
4MSE9Mod. Amino AcidSELENOMETHIONINE
5UNL1Ligand/IonUNKNOWN LIGAND
6ZN1Ligand/IonZINC ION
Biological Unit 1 (4, 30)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2FMT8Ligand/IonFORMIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
5UNL2Ligand/IonUNKNOWN LIGAND
6ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:59 , HIS A:98 , GLU A:114 , GLU A:117BINDING SITE FOR RESIDUE ZN A 153
2AC2SOFTWAREHIS A:126 , GLU A:145 , HOH A:364 , HOH A:365BINDING SITE FOR RESIDUE MG A 154
3AC3SOFTWARECYS A:7 , ASP A:9 , FMT A:159BINDING SITE FOR RESIDUE MG A 155
4AC4SOFTWARELEU A:90 , ASN A:91 , LEU A:92 , HIS A:126 , THR A:128 , TYR A:135 , HOH A:325BINDING SITE FOR RESIDUE UNL A 156
5AC5SOFTWAREARG A:99 , GLY A:102 , ILE A:103 , GLY A:104 , HOH A:165 , HOH A:181 , HOH A:186 , HOH A:258 , HOH A:331BINDING SITE FOR RESIDUE EDO A 157
6AC6SOFTWAREARG A:18 , TRP A:74 , PRO A:75 , HIS A:77 , TYR A:88 , HOH A:315BINDING SITE FOR RESIDUE FMT A 158
7AC7SOFTWARECYS A:7 , ARG A:16 , ARG A:23 , MG A:155 , HOH A:239BINDING SITE FOR RESIDUE FMT A 159
8AC8SOFTWARELEU A:82 , GLN A:83 , LYS A:85 , ARG A:118 , GLY A:119 , HOH A:352BINDING SITE FOR RESIDUE FMT A 160
9AC9SOFTWAREASP A:41BINDING SITE FOR RESIDUE FMT A 161

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q0Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Q0Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q0Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
 aligned with Q470Y2_CUPNJ | Q470Y2 from UniProtKB/TrEMBL  Length:152

    Alignment length:153
                             1                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149   
         Q470Y2_CUPNJ     - -MECRPLCIDDLELVCRHREAMFREAGRDALTLAAMQDPFRDWLLPRLADGSYFGWVMEEGGAPLAGIGLMVIEWPPHPSHPLQDKRGYILNLYVDPSHRERGIGQALMNRAEAEFAERGIAFAVLHATEMGQPLYARMGWSPTTEMSKPIAG 152
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2q0yA01 A:0-137  [code=3.40.630.30, no name defined]                                                                                      --------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeee...........eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eee.....hhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q0y A   0 GmECRPLCIDDLELVCRHREAmFREAGRDALTLAAmQDPFRDWLLPRLADGSYFGWVmEEGGAPLAGIGLmVIEWPPHPSHPLQDKRGYILNLYVDPSHRERGIGQALmNRAEAEFAERGIAFAVLHATEmGQPLYARmGWSPTTEmSKPIAG 152
                             |       9        19 |      29     |  39        49       |59        69|       79        89        99       109       119       129|      139      |149   
                             |                  21-MSE        35-MSE                57-MSE       70-MSE                               108-MSE               130-MSE 138-MSE 146-MSE  
                             1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Q0Y)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Q0Y)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q470Y2_CUPNJ | Q470Y2)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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