2PWH - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE TREHALULOSE SYNTHASE MUTB FROM PSEUDOMONAS MESOACIDOPHILA MX-45

Authors :   S. Ravaud, X. Robert, R. Haser, N. Aghajari

Date :   11 May 07 (Deposition) - 26 Jun 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Trehalulose Synthase, Sucrose Isomerase, Alpha-Amylase Family, (Beta/Alpha)8 Barrel (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Ravaud, X. Robert, H. Watzlawick, R. Haser, R. Mattes, N. Aghajari
Trehalulose Synthase Native And Carbohydrate Complexed Structures Provide Insights Into Sucrose Isomerization.
J. Biol. Chem. V. 61 100 2007
PubMed-ID: 17597061 | Reference-DOI: 10.1074/JBC.M704515200
(for further references see the PDB file header)

Molecule 1 - SUCROSE ISOMERASE
	Chains	:	A, B
	EC Number	:	5.4.99.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHWG315
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	MUTB
	Organism Scientific	:	PSEUDOMONAS MESOACIDOPHILA
	Organism Taxid	:	265293
	Strain	:	MX-45

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:22 , ASN B:24 , ASP B:26 , ILE B:28 , ASP B:30 , HOH B:4097 , HOH B:4405	BINDING SITE FOR RESIDUE CA B 7000
2	AC2	SOFTWARE	ASP A:22 , ASN A:24 , ASP A:26 , ILE A:28 , ASP A:30 , HOH A:4531 , HOH A:4715	BINDING SITE FOR RESIDUE CA A 7001

(no "SS Bond" information available for 2PWH)

(no "Cis Peptide Bond" information available for 2PWH)

(no "SAP(SNP)/Variant" information available for 2PWH)

(no "PROSITE Motif" information available for 2PWH)

(no "Exon" information available for 2PWH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:556
 aligned with Q2PS28_9BURK | Q2PS28 from UniProtKB/TrEMBL  Length:584

    Alignment length:556
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578      
         Q2PS28_9BURK    29 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK 584
               SCOP domains d2pwha1 A:2-478 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                            d2pwha2 A:479-557 automated matches                                             SCOP domains
               CATH domains 2pwhA01 A:2-105,A:176-479 Glycosidases                                                                  2pwhA02 A:106-175 Oligo-1,6-glucosidase; Domain 2                     2pwhA01 A:2-105,A:176-479 Glycosidases                                                                                                                                                                                                                                                                          2pwhA03 A:480-557 Golgi alpha-mannosidase II                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh..eeeehhhhh.........hhhhhhhhhhhhhhhh..eeee...ee...........eeeee.hhhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh......hhhhh.ee...................eee......eee.............hhhhhhhhhhhhhhhhh....eeee.hhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh...eee...................hhhhhhhhhhhhhhhhh.....ee........hhhhhh......hhhhhhhhhhhhhh....eeeee.............hhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhh.........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhheeee.......eeeeeeee..eeeeeeee.....eeee......eeeeeeee...........eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pwh A   2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK 557
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551

Chain B from PDB  Type:PROTEIN  Length:556
 aligned with Q2PS28_9BURK | Q2PS28 from UniProtKB/TrEMBL  Length:584

    Alignment length:556
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578      
         Q2PS28_9BURK    29 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK 584
               SCOP domains d2pwhb1 B:2-478 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                            d2pwhb2 B:479-557 automated matches                                             SCOP domains
               CATH domains 2pwhB01 B:2-105,B:176-479 Glycosidases                                                                  2pwhB02 B:106-175 Oligo-1,6-glucosidase; Domain 2                     2pwhB01 B:2-105,B:176-479 Glycosidases                                                                                                                                                                                                                                                                          2pwhB03 B:480-557 Golgi alpha-mannosidase II                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh..eeeehhhhh.........hhhhhhhhhhhhhhhh..eeee...ee...........eeeee.hhhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh......hhhhh.ee...................eee......eee.............hhhhhhhhhhhhhhhhh....eeee.hhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh...eee...................hhhhhhhhhhhhhhhh......ee........hhhhhhh.....hhhhhhhhhhhhhh....eeeee.............hhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhh.........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhh.hhhhhheeee.......eeeeeeee..eeeeeeee.....eeee......eeeeeeee...........eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pwh B   2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK 557
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Glycosyl hydrolase domain (397)

Superfamily: Glycosyl hydrolase domain (397)

Family: automated matches (85)

Protein domain: automated matches (85)

Pseudomonas mesoacidophila [TaxId: 265293] (9)

1a	d2pwha2	A:479-557
1b	d2pwhb2	B:479-557

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: (Trans)glycosidases (1191)

Family: Amylase, catalytic domain (385)

Protein domain: automated matches (71)

Pseudomonas mesoacidophila [TaxId: 265293] (9)

2a	d2pwha1	A:2-478
2b	d2pwhb1	B:2-478

(no "Pfam Domain" information available for 2PWH)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q2PS28_9BURK | Q2PS28)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric Unit
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	Sites
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2pwh)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Access by PDB/NDB ID
	2pwh
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		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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	Q2PS28_9BURK \| Q2PS28
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

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	5.4.99.1
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		Pathway	:	KEGG \| MetaCyc

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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	Q2PS28_9BURK \| Q2PS28
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UniProtKB/Swiss-Prot
	Q2PS28_9BURK \| Q2PS28	:	4gi6 4gi8 4gi9 4gia 4gin 4h2c 4h7v 4h8h 4h8u 4h8v 4ha1
UniProtKB/TrEMBL
	Q2PS28_9BURK \| Q2PS28	:	1zja 1zjb 2pwd 2pwe 2pwf 2pwg 4go8 4go9

1zja	TREHALULOSE SYNTHASE, MUTB, FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH TRIS (P1 FORM)
1zjb	TREHALULOSE SYNTHASE, MUTB, FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH TRIS (P21 FORM)
2pwd	TREHALULOSE SYNTHASE, MUTB, FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH DEOXYNOJIRIMYCIN
2pwe	TREHALULOSE SYNTHASE, MUTB, INACTIVE MUTANT FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH SUCROSE
2pwf	TREHALULOSE SYNTHASE, MUTB, INACTIVE MUTANT FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH GLUCOSE
2pwg	TREHALULOSE SYNTHASE, MUTB, FROM PSEUDOMONAS MESOACIDOPHILA MX-45 IN COMPLEX WITH CASTANOSPERMINE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (3, 6)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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