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Title :   CRYSTAL STRUCTURES OF THE LUCIFERASE AND GREEN FLUORESCENT PROTEIN FROM RENILLA RENIFORMIS

Authors :   A. M. Loening, T. D. Fenn, S. S. Gambhir

Date :   06 May 07 (Deposition) - 05 Jun 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha/Beta-Hydrolase, Luciferase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. M. Loening, T. D. Fenn, S. S. Gambhir
Crystal Structures Of The Luciferase And Green Fluorescent Protein From Renilla Reniformis.
J. Mol. Biol. V. 374 1017 2007
PubMed-ID: 17980388 | Reference-DOI: 10.1016/J.JMB.2007.09.078

Molecule 1 - RENILLA-LUCIFERIN 2-MONOOXYGENASE
	Chains	:	A, B
	EC Number	:	1.13.12.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PBAD
	Expression System Strain	:	LMG194
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	RLUC
	Mutation	:	YES
	Organism Scientific	:	RENILLA RENIFORMIS
	Organism Taxid	:	6136
	Synonym	:	RENILLA-TYPE LUCIFERASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CEI	2	Ligand/Ion	N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CEI	1	Ligand/Ion	N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CEI	1	Ligand/Ion	N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:156 , ASP A:162 , MET A:174 , PHE A:180 , HIS A:285 , HOH A:655	BINDING SITE FOR RESIDUE CEI A 501
2	AC2	SOFTWARE	TRP B:156 , ASP B:162 , MET B:174 , PHE B:180 , PHE B:261 , HIS B:285 , HOH B:680 , HOH B:698	BINDING SITE FOR RESIDUE CEI B 502

(no "SS Bond" information available for 2PSJ)

Asymmetric Unit

No.	Residues
1	Asp A:258	-	Pro A:259
2	Asp B:258	-	Pro B:259

(no "SAP(SNP)/Variant" information available for 2PSJ)

(no "PROSITE Motif" information available for 2PSJ)

(no "Exon" information available for 2PSJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:306
 aligned with LUCI_RENRE | P27652 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:308
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302        
           LUCI_RENRE     3 SKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNAASSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGACLAFHYSYEHQDKIKAIVHAESVVDVIESWDEWPDIEEDIALIKSEEGEKMVLENNFFVETMLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKMFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFSQEDAPDEMGKYIKSFVERVLKNE 310
               SCOP domains d2psja_ A: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2psjA00 A:3-310  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh.hhhhhhhh.eeeee..eeeeeee.......eeeee.....hhhhhh.hhhhh....eeeee................hhhhhhhhhhhhhh.......eeeeeeehhhhhhhhhhhhh...eeeeeeeee.......--...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2psj A   3 SKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIES--EWPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKLFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFLQEDAPDEMGKYIKSFVERVLKNE 310
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  |    162       172       182       192       202       212       222       232       242       252       262       272       282       292       302        
                                                                                                                                                                               152  |                                                                                                                                                           
                                                                                                                                                                                  155

Chain B from PDB  Type:PROTEIN  Length:306
 aligned with LUCI_RENRE | P27652 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:308
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302        
           LUCI_RENRE     3 SKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNAASSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGACLAFHYSYEHQDKIKAIVHAESVVDVIESWDEWPDIEEDIALIKSEEGEKMVLENNFFVETMLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKMFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFSQEDAPDEMGKYIKSFVERVLKNE 310
               SCOP domains d2psjb_ B: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2psjB00 B:3-310  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                CATH domains
           Pfam domains (1) --------------------------------------------------------------------Abhydrolase_1-2psjB01 B:71-301                                                                                                                                                                                                         --------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------Abhydrolase_1-2psjB02 B:71-301                                                                                                                                                                                                         --------- Pfam domains (2)
         Sec.struct. author .......hhhhh.hhhhhhhh.eeeee..eeeeeee.......eeeee.....hhhhhh.hhhhhh...eeeee................hhhhhhhhhhhhhh.......eeeeeeehhhhhhhhhhhhh...eeeeeeeee.......--...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2psj B   3 SKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIES--EWPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKLFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFLQEDAPDEMGKYIKSFVERVLKNE 310
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  |    162       172       182       192       202       212       222       232       242       252       262       272       282       292       302        
                                                                                                                                                                               152  |                                                                                                                                                           
                                                                                                                                                                                  155

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: automated matches (184)

Protein domain: automated matches (184)

Renilla reniformis [TaxId: 6136] (5)

1a	d2psja_	A:
1b	d2psjb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1820, no name defined] (692)

Renilla reniformis. Organism_taxid: 6136. (5)

1a	2psjA00	A:3-310
1b	2psjB00	B:3-310

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AB_hydrolase (347)

Family: Abhydrolase_1 (28)

Renilla reniformis (Sea pansy) (4)

1a	Abhydrolase_1-2psjB01	B:71-301
1b	Abhydrolase_1-2psjB02	B:71-301

Asymmetric Unit(hide GO term definitions)

Chain A,B (LUCI_RENRE | P27652)

molecular function
	GO:0050248	Renilla-luciferin 2-monooxygenase activity	Catalysis of the reaction: Renilla luciferin + O2 = oxidized Renilla luciferin + CO2 + light.
	GO:0016831	carboxy-lyase activity	Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0008218	bioluminescence	The production of light by certain enzyme-catalyzed reactions in cells.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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		Asp B:258 - Pro B:259	[ RasMol ]

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	LUCI_RENRE \| P27652	:	2psd 2pse 2psf 2psh

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