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(-) Description

Title :  CRYSTAL STRUCTURE OF MUTT/NUDIX FAMILY PROTEIN FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  C. Chang, T. A. Binkowski, M. Zhou, J. Abdullah, A. Joachimiak, Midwest For Structural Genomics (Mcsg)
Date :  02 May 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mutt/Nudix Family Protein, Streptococcus Pneumoniae, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, T. A. Binkowski, M. Zhou, J. Abdullah, A. Joachimiak
Crystal Structure Of Mutt/Nudix Family Protein From Streptococcus Pneumoniae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MUTT/NUDIX FAMILY PROTEIN
    Atcc: BAA-334
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SP_0119
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:146 , HOH A:218 , GLN B:71 , LEU B:72 , HOH B:205 , HOH B:216 , HOH B:217BINDING SITE FOR RESIDUE PO4 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PQV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:129 -Pro A:130
2Val B:129 -Pro B:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PQV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PQV)

(-) Exons   (0, 0)

(no "Exon" information available for 2PQV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with A0A0H2UMZ7_S | A0A0H2UMZ7 from UniProtKB/TrEMBL  Length:151

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
         A0A0H2UMZ7_S     1 MTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLE 150
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -2pqvA00 A:2-150 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeeeeeee..ee..eeeeeee..eee.eeee.....hhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeeeeeeeeee......eeee..eeeeeeeee.hhhhhh.ee..hhhhhh.......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pqv A   1 mTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTmQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLE 150
                            |       10        20        30        40        50        60        70        80        90       100     | 110       120       130       140       150
                            |                                                                                                      106-MSE                                        
                            1-MSE                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with A0A0H2UMZ7_S | A0A0H2UMZ7 from UniProtKB/TrEMBL  Length:151

    Alignment length:152
                             1                                                                                                                                                      
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149  
         A0A0H2UMZ7_S     - -MTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLEE 151
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pqvB00 B:0-151 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..eeeeeeeee..ee..eeeeeee..eee.eeee.....hhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeeeeeeeeee......eeee..eeeeeeeee.hhhhhh.....hhhhhh.......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pqv B   0 AmTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTmQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLEE 151
                             |       9        19        29        39        49        59        69        79        89        99      |109       119       129       139       149  
                             1-MSE                                                                                                  106-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PQV)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2PQV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2PQV)

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